RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 PPARGP37231 505 aaPredicted RBP21.13■□□□□ 0.97
VPS28-212ENST00000530836 TTPAP49638 278 aa21.13■□□□□ 0.97
VPS28-212ENST00000530836 STC1P52823 247 aa21.13■□□□□ 0.97
VPS28-212ENST00000530836 SLC12A2P55011 1212 aa21.13■□□□□ 0.97
VPS28-212ENST00000530836 ELAVL3Q14576 367 aaKnown RBP21.13■□□□□ 0.97
VPS28-212ENST00000530836 ZNF234Q14588 700 aa21.13■□□□□ 0.97
VPS28-212ENST00000530836 HSF5Q4G112 596 aaPredicted RBP21.13■□□□□ 0.97
VPS28-212ENST00000530836 TAF1BQ53T94 588 aaPredicted RBP21.13■□□□□ 0.97
VPS28-212ENST00000530836 ARSIQ5FYB1 569 aa21.13■□□□□ 0.97
VPS28-212ENST00000530836 ZNF513Q8N8E2 541 aaPredicted RBP21.13■□□□□ 0.97
VPS28-212ENST00000530836 IL17RCQ8NAC3 791 aa21.13■□□□□ 0.97
VPS28-212ENST00000530836 SMIM14Q96QK8 99 aa21.13■□□□□ 0.97
VPS28-212ENST00000530836 VPS11Q9H270 941 aa21.13■□□□□ 0.97
VPS28-212ENST00000530836 FBXO6Q9NRD1 293 aaPredicted RBP21.13■□□□□ 0.97
VPS28-212ENST00000530836 MARCH4Q9P2E8 410 aaPredicted RBP21.13■□□□□ 0.97
VPS28-212ENST00000530836 A0A096LPK6 155 aa21.12■□□□□ 0.97
VPS28-212ENST00000530836 OR51F1A6NGY5 319 aa21.12■□□□□ 0.97
VPS28-212ENST00000530836 FOXN2P32314 431 aa21.12■□□□□ 0.97
VPS28-212ENST00000530836 ETV4P43268 484 aa21.12■□□□□ 0.97
VPS28-212ENST00000530836 CSRP3P50461 194 aa21.12■□□□□ 0.97
VPS28-212ENST00000530836 PPARDQ03181 441 aa21.12■□□□□ 0.97
VPS28-212ENST00000530836 CACNG1Q06432 222 aa21.12■□□□□ 0.97
VPS28-212ENST00000530836 EGFLAMQ63HQ2 1017 aa21.12■□□□□ 0.97
VPS28-212ENST00000530836 SERPINA13PQ6UXR4 307 aa21.12■□□□□ 0.97
VPS28-212ENST00000530836 CERS6Q6ZMG9 384 aa21.12■□□□□ 0.97
VPS28-212ENST00000530836 DSG4Q86SJ6 1040 aa21.12■□□□□ 0.97
VPS28-212ENST00000530836 DTWD2Q8NBA8 298 aa21.12■□□□□ 0.97
VPS28-212ENST00000530836 CHMP6Q96FZ7 201 aa21.12■□□□□ 0.97
VPS28-212ENST00000530836 TTC1Q99614 292 aa21.12■□□□□ 0.97
VPS28-212ENST00000530836 PAIP2Q9BPZ3 127 aaKnown RBP21.12■□□□□ 0.97
VPS28-212ENST00000530836 CAMSAP3Q9P1Y5 1249 aaPredicted RBP21.12■□□□□ 0.97
VPS28-212ENST00000530836 FKBPLQ9UIM3 349 aa21.12■□□□□ 0.97
VPS28-212ENST00000530836 SLC30A1Q9Y6M5 507 aa21.12■□□□□ 0.97
VPS28-212ENST00000530836 CLDN7O95471 211 aa21.11■□□□□ 0.97
VPS28-212ENST00000530836 C2P06681 752 aa21.11■□□□□ 0.97
VPS28-212ENST00000530836 DHRS4L1P0CG22 281 aa21.11■□□□□ 0.97
VPS28-212ENST00000530836 SUOXP51687 545 aa21.11■□□□□ 0.97
VPS28-212ENST00000530836 RAB10P61026 200 aa21.11■□□□□ 0.97
VPS28-212ENST00000530836 ZKSCAN8Q15776 578 aaPredicted RBP21.11■□□□□ 0.97
VPS28-212ENST00000530836 C9orf64Q5T6V5 341 aa21.11■□□□□ 0.97
VPS28-212ENST00000530836 FAM45BPQ6NSW5 357 aa21.11■□□□□ 0.97
VPS28-212ENST00000530836 CNSTQ6PJW8 725 aa21.11■□□□□ 0.97
VPS28-212ENST00000530836 CRTC1Q6UUV9 634 aa21.11■□□□□ 0.97
VPS28-212ENST00000530836 RAPH1Q70E73 1250 aa21.11■□□□□ 0.97
VPS28-212ENST00000530836 TRMT11Q7Z4G4 463 aaKnown RBP21.11■□□□□ 0.97
VPS28-212ENST00000530836 GDAP1Q8TB36 358 aa21.11■□□□□ 0.97
VPS28-212ENST00000530836 FAM45AQ8TCE6 357 aa21.11■□□□□ 0.97
VPS28-212ENST00000530836 ELMO2Q96JJ3 720 aa21.11■□□□□ 0.97
VPS28-212ENST00000530836 TSNARE1Q96NA8 513 aa21.11■□□□□ 0.97
VPS28-212ENST00000530836 FAM111AQ96PZ2 611 aa21.11■□□□□ 0.97
VPS28-212ENST00000530836 MLXIPLQ9NP71 852 aa21.11■□□□□ 0.97
VPS28-212ENST00000530836 SLC17A7Q9P2U7 560 aa21.11■□□□□ 0.97
VPS28-212ENST00000530836 NPIPB15A6NHN6 443 aaPredicted RBP21.11■□□□□ 0.97
VPS28-212ENST00000530836 UPK3BL1B0FP48 263 aa21.11■□□□□ 0.97
VPS28-212ENST00000530836 UPK3BL2E5RIL1 263 aa21.11■□□□□ 0.97
VPS28-212ENST00000530836 KLF8O95600 359 aaPredicted RBP21.11■□□□□ 0.97
VPS28-212ENST00000530836 CTSLP07711 333 aa21.11■□□□□ 0.97
VPS28-212ENST00000530836 XPAP23025 273 aaPredicted RBP21.11■□□□□ 0.97
VPS28-212ENST00000530836 NUBP1P53384 320 aa21.11■□□□□ 0.97
VPS28-212ENST00000530836 XIAPP98170 497 aa21.11■□□□□ 0.97
VPS28-212ENST00000530836 PEX6Q13608 980 aa21.11■□□□□ 0.97
VPS28-212ENST00000530836 DBN1Q16643 649 aa21.11■□□□□ 0.97
VPS28-212ENST00000530836 PDK4Q16654 411 aa21.11■□□□□ 0.97
VPS28-212ENST00000530836 CCDC153Q494R4 210 aa21.11■□□□□ 0.97
VPS28-212ENST00000530836 LYPLAL1Q5VWZ2 237 aa21.11■□□□□ 0.97
VPS28-212ENST00000530836 RGS9BPQ6ZS82 235 aa21.11■□□□□ 0.97
VPS28-212ENST00000530836 CMC1Q7Z7K0 106 aa21.11■□□□□ 0.97
VPS28-212ENST00000530836 STK40Q8N2I9 435 aa21.11■□□□□ 0.97
VPS28-212ENST00000530836 GPATCH11Q8N954 259 aa21.11■□□□□ 0.97
VPS28-212ENST00000530836 TXNDC5Q8NBS9 432 aaKnown RBP21.11■□□□□ 0.97
VPS28-212ENST00000530836 EID2BQ96D98 161 aa21.11■□□□□ 0.97
VPS28-212ENST00000530836 PPP1R16AQ96I34 528 aa21.11■□□□□ 0.97
VPS28-212ENST00000530836 ACOX2Q99424 681 aa21.11■□□□□ 0.97
VPS28-212ENST00000530836 BPIFA1Q9NP55 256 aa21.11■□□□□ 0.97
VPS28-212ENST00000530836 ZDHHC4Q9NPG8 344 aa21.11■□□□□ 0.97
VPS28-212ENST00000530836 SPATA6Q9NWH7 488 aaPredicted RBP21.11■□□□□ 0.97
VPS28-212ENST00000530836 A0A087X1B8 175 aa21.1■□□□□ 0.97
VPS28-212ENST00000530836 NDUFS3O75489 264 aa21.1■□□□□ 0.97
VPS28-212ENST00000530836 SPAM1P38567 509 aa21.1■□□□□ 0.97
VPS28-212ENST00000530836 ABCG1P45844 678 aa21.1■□□□□ 0.97
VPS28-212ENST00000530836 ARHGEF7Q14155 803 aa21.1■□□□□ 0.97
VPS28-212ENST00000530836 PTPRRQ15256 657 aa21.1■□□□□ 0.97
VPS28-212ENST00000530836 ZRANB3Q5FWF4 1079 aa21.1■□□□□ 0.97
VPS28-212ENST00000530836 CDHR3Q6ZTQ4 885 aa21.1■□□□□ 0.97
VPS28-212ENST00000530836 C1orf210Q8IVY1 113 aa21.1■□□□□ 0.97
VPS28-212ENST00000530836 TRIM42Q8IWZ5 723 aa21.1■□□□□ 0.97
VPS28-212ENST00000530836 RAVER1Q8IY67 606 aaKnown RBP21.1■□□□□ 0.97
VPS28-212ENST00000530836 CHPFQ8IZ52 775 aa21.1■□□□□ 0.97
VPS28-212ENST00000530836 OMDQ99983 421 aa21.1■□□□□ 0.97
VPS28-212ENST00000530836 CAB39LQ9H9S4 337 aa21.1■□□□□ 0.97
VPS28-212ENST00000530836 RAD18Q9NS91 495 aa21.1■□□□□ 0.97
VPS28-212ENST00000530836 PPM1HQ9ULR3 514 aa21.1■□□□□ 0.97
VPS28-212ENST00000530836 ACOT9Q9Y305 439 aa21.1■□□□□ 0.97
VPS28-212ENST00000530836 VWA7Q9Y334 891 aa21.1■□□□□ 0.97
VPS28-212ENST00000530836 ADAM23O75077 832 aa21.09■□□□□ 0.97
VPS28-212ENST00000530836 FAM107AO95990 144 aa21.09■□□□□ 0.97
VPS28-212ENST00000530836 NTSR1P30989 418 aa21.09■□□□□ 0.97
VPS28-212ENST00000530836 VIPR1P32241 457 aa21.09■□□□□ 0.97
VPS28-212ENST00000530836 SLC26A3P40879 764 aa21.09■□□□□ 0.97
VPS28-212ENST00000530836 ADARP55265 1226 aaKnown RBP21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms