RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 RBM20Q5T481 1227 aaKnown RBP20.93■□□□□ 0.94
VPS28-208ENST00000527797 HECTD2Q5U5R9 776 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 FAM45BPQ6NSW5 357 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 LVRNQ6Q4G3 990 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 CDHR3Q6ZTQ4 885 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 ERN2Q76MJ5 926 aaKnown RBP20.93■□□□□ 0.94
VPS28-208ENST00000527797 TRMT11Q7Z4G4 463 aaKnown RBP20.93■□□□□ 0.94
VPS28-208ENST00000527797 FAM45AQ8TCE6 357 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 ZNF398Q8TD17 642 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 TSPAN17Q96FV3 270 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 PLEKHG4BQ96PX9 1271 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 TTC1Q99614 292 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 GABRG3Q99928 467 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 RSPH9Q9H1X1 276 aaPredicted RBP20.93■□□□□ 0.94
VPS28-208ENST00000527797 RAD18Q9NS91 495 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 GRID1Q9ULK0 1009 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 ANKRD6Q9Y2G4 727 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 ASMTLO95671 621 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 ADRB3P13945 408 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 IL9P15248 144 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 CSRP3P50461 194 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 TAS2R39P59534 338 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 NFATC2Q13469 925 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 STARD3Q14849 445 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 CHRNA6Q15825 494 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 INSCQ1MX18 579 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 GPR33Q49SQ1 333 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 SLC44A4Q53GD3 710 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 IER5LQ5T953 404 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 LYPLAL1Q5VWZ2 237 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 GDAP1Q8TB36 358 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 LPGAT1Q92604 370 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 FAM111AQ96PZ2 611 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 HDAC8Q9BY41 377 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 C12orf65Q9H3J6 166 aaKnown RBP20.93■□□□□ 0.94
VPS28-208ENST00000527797 UBA6A0AVT1 1052 aaPredicted RBP20.92■□□□□ 0.94
VPS28-208ENST00000527797 PHGDHO43175 533 aaKnown RBP20.92■□□□□ 0.94
VPS28-208ENST00000527797 KLF8O95600 359 aaPredicted RBP20.92■□□□□ 0.94
VPS28-208ENST00000527797 GSTA1P08263 222 aa20.92■□□□□ 0.94
VPS28-208ENST00000527797 LSP1P33241 339 aa20.92■□□□□ 0.94
VPS28-208ENST00000527797 PTGER3P43115 390 aa20.92■□□□□ 0.94
VPS28-208ENST00000527797 MRPS21P82921 87 aaKnown RBP20.92■□□□□ 0.94
VPS28-208ENST00000527797 ZKSCAN8Q15776 578 aaPredicted RBP20.92■□□□□ 0.94
VPS28-208ENST00000527797 HABP4Q5JVS0 413 aaKnown RBP20.92■□□□□ 0.94
VPS28-208ENST00000527797 HSD11B1LQ7Z5J1 315 aa20.92■□□□□ 0.94
VPS28-208ENST00000527797 CEP97Q8IW35 865 aa20.92■□□□□ 0.94
VPS28-208ENST00000527797 IL17RCQ8NAC3 791 aa20.92■□□□□ 0.94
VPS28-208ENST00000527797 FAM3CQ92520 227 aa20.92■□□□□ 0.94
VPS28-208ENST00000527797 CCDC68Q9H2F9 335 aa20.92■□□□□ 0.94
VPS28-208ENST00000527797 CRLS1Q9UJA2 301 aa20.92■□□□□ 0.94
VPS28-208ENST00000527797 ACOT9Q9Y305 439 aa20.92■□□□□ 0.94
VPS28-208ENST00000527797 COL4A2P08572 1712 aa20.91■□□□□ 0.94
VPS28-208ENST00000527797 RGSL1A5PLK6 1076 aa20.91■□□□□ 0.94
VPS28-208ENST00000527797 LOC730098B7Z3J9 87 aa20.91■□□□□ 0.94
VPS28-208ENST00000527797 ELFN1P0C7U0 828 aa20.91■□□□□ 0.94
VPS28-208ENST00000527797 SATB1Q01826 763 aa20.91■□□□□ 0.94
VPS28-208ENST00000527797 FBXO43Q4G163 708 aa20.91■□□□□ 0.94
VPS28-208ENST00000527797 ZNF549Q6P9A3 640 aa20.91■□□□□ 0.94
VPS28-208ENST00000527797 LIPIQ6XZB0 460 aa20.91■□□□□ 0.94
VPS28-208ENST00000527797 RFLNAQ6ZTI6 216 aa20.91■□□□□ 0.94
VPS28-208ENST00000527797 OR2T3Q8NH03 318 aa20.91■□□□□ 0.94
VPS28-208ENST00000527797 RAB7BQ96AH8 199 aa20.91■□□□□ 0.94
VPS28-208ENST00000527797 OLFM1Q99784 485 aa20.91■□□□□ 0.94
VPS28-208ENST00000527797 AARSD1Q9BTE6 412 aaKnown RBP20.91■□□□□ 0.94
VPS28-208ENST00000527797 CDH19Q9H159 772 aa20.91■□□□□ 0.94
VPS28-208ENST00000527797 FAM83DQ9H4H8 585 aa20.91■□□□□ 0.94
VPS28-208ENST00000527797 A0A087X1B8 175 aa20.9■□□□□ 0.94
VPS28-208ENST00000527797 TRBV5-4A0A0C4DH59 114 aa20.9■□□□□ 0.94
VPS28-208ENST00000527797 GOLGA8CPA6NN73 597 aa20.9■□□□□ 0.94
VPS28-208ENST00000527797 H0Y858 1186 aa20.9■□□□□ 0.94
VPS28-208ENST00000527797 PSMD11O00231 422 aa20.9■□□□□ 0.94
VPS28-208ENST00000527797 PLK4O00444 970 aa20.9■□□□□ 0.94
VPS28-208ENST00000527797 AREL1O15033 823 aa20.9■□□□□ 0.94
VPS28-208ENST00000527797 GPR39O43194 453 aa20.9■□□□□ 0.94
VPS28-208ENST00000527797 ADH1BP00325 375 aa20.9■□□□□ 0.94
VPS28-208ENST00000527797 SLC35E2BP0CK96 405 aa20.9■□□□□ 0.94
VPS28-208ENST00000527797 COL6A2P12110 1019 aa20.9■□□□□ 0.94
VPS28-208ENST00000527797 UGT1A6P19224 532 aa20.9■□□□□ 0.94
VPS28-208ENST00000527797 UGT1A1P22309 533 aa20.9■□□□□ 0.94
VPS28-208ENST00000527797 UGT1A4P22310 534 aa20.9■□□□□ 0.94
VPS28-208ENST00000527797 FMO4P31512 558 aa20.9■□□□□ 0.94
VPS28-208ENST00000527797 UGT1A3P35503 534 aa20.9■□□□□ 0.94
VPS28-208ENST00000527797 UGT1A5P35504 534 aa20.9■□□□□ 0.94
VPS28-208ENST00000527797 ETV4P43268 484 aa20.9■□□□□ 0.94
VPS28-208ENST00000527797 ITGA9Q13797 1035 aa20.9■□□□□ 0.94
VPS28-208ENST00000527797 TERF2Q15554 542 aa20.9■□□□□ 0.94
VPS28-208ENST00000527797 CST6Q15828 149 aa20.9■□□□□ 0.94
VPS28-208ENST00000527797 KYAT3Q6YP21 454 aaKnown RBP20.9■□□□□ 0.94
VPS28-208ENST00000527797 CLEC14AQ86T13 490 aa20.9■□□□□ 0.94
VPS28-208ENST00000527797 SERPINA9Q86WD7 417 aa20.9■□□□□ 0.94
VPS28-208ENST00000527797 TXNDC5Q8NBS9 432 aaKnown RBP20.9■□□□□ 0.94
VPS28-208ENST00000527797 CKAP2Q8WWK9 683 aa20.9■□□□□ 0.94
VPS28-208ENST00000527797 TSNARE1Q96NA8 513 aa20.9■□□□□ 0.94
VPS28-208ENST00000527797 CCDC134Q9H6E4 229 aa20.9■□□□□ 0.94
VPS28-208ENST00000527797 FBRSQ9HAH7 460 aa20.9■□□□□ 0.94
VPS28-208ENST00000527797 ITM2BQ9Y287 266 aa20.9■□□□□ 0.94
VPS28-208ENST00000527797 SZT2Q5T011 3432 aa20.9■□□□□ 0.94
VPS28-208ENST00000527797 NEMP1O14524 444 aa20.89■□□□□ 0.94
VPS28-208ENST00000527797 C5AR1P21730 350 aa20.89■□□□□ 0.94
VPS28-208ENST00000527797 FDXRP22570 491 aa20.89■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms