RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 TMCO4Q5TGY1 634 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 APTXQ7Z2E3 356 aaKnown RBP6.54□□□□□ -1.36
CD44-221ENST00000526000 ZNF438Q7Z4V0 828 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 TECPR1Q7Z6L1 1165 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 TMEM135Q86UB9 458 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 NLGN4XQ8N0W4 816 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 CCDC112Q8NEF3 446 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 NLGN4YQ8NFZ3 816 aaPredicted RBP6.54□□□□□ -1.36
CD44-221ENST00000526000 OR10G6Q8NH81 332 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 SLC37A2Q8TED4 501 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 KIAA1143Q96AT1 154 aaPredicted RBP6.54□□□□□ -1.36
CD44-221ENST00000526000 AP2M1Q96CW1 435 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 RTP4Q96DX8 246 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 RIOK2Q9BVS4 552 aaKnown RBP6.54□□□□□ -1.36
CD44-221ENST00000526000 CDH19Q9H159 772 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 ADNPQ9H2P0 1102 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 LRRC4CQ9HCJ2 640 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 TRNAU1APQ9NX07 287 aaKnown RBP6.54□□□□□ -1.36
CD44-221ENST00000526000 TRIM10Q9UDY6 481 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 PILRAQ9UKJ1 303 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 MYO6Q9UM54 1294 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 PHTF1Q9UMS5 762 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 CHKBQ9Y259 395 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 MAN2B2Q9Y2E5 1009 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 PCDHGA3Q9Y5H0 932 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 OAS3Q9Y6K5 1087 aaKnown RBP6.54□□□□□ -1.36
CD44-221ENST00000526000 CHD5Q8TDI0 1954 aa6.54□□□□□ -1.36
CD44-221ENST00000526000 TMEM191CA6NGB0 347 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 B4E171 279 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.53□□□□□ -1.36
CD44-221ENST00000526000 POLR1CO15160 346 aaPredicted RBP6.53□□□□□ -1.36
CD44-221ENST00000526000 HTRA2O43464 458 aaPredicted RBP6.53□□□□□ -1.36
CD44-221ENST00000526000 PGLSO95336 258 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 CLDN7O95471 211 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 FTLP02792 175 aaPredicted RBP6.53□□□□□ -1.36
CD44-221ENST00000526000 IVLP07476 585 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 KRT7P08729 469 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 FURINP09958 794 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 SKILP12757 684 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 GP1BBP13224 206 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 ATP1A3P13637 1013 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 ACP5P13686 325 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 DESP17661 470 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 MAP4P27816 1152 aaKnown RBP6.53□□□□□ -1.36
CD44-221ENST00000526000 IL1R2P27930 398 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 CASRP41180 1078 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 TSPAN7P41732 249 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 SSR1P43307 286 aaKnown RBP6.53□□□□□ -1.36
CD44-221ENST00000526000 EPHB1P54762 984 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 SH3BP2P78314 561 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 MC2RQ01718 297 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 DSC2Q02487 901 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 HHEXQ03014 270 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 PTSQ03393 145 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 CDC20Q12834 499 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 MMRN1Q13201 1228 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 TRIM14Q14142 442 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 IHHQ14623 411 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 NR1I3Q14994 352 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 MARC1Q5VT66 337 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 LRRC66Q68CR7 880 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 TXNRD3NBQ6F5E7 133 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 IRF2BP2Q7Z5L9 587 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 GALNT13Q8IUC8 556 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 CBARPQ8N350 705 aaPredicted RBP6.53□□□□□ -1.36
CD44-221ENST00000526000 TTC30BQ8N4P2 665 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 TEX19Q8NA77 164 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 RNF214Q8ND24 703 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 APOBEC4Q8WW27 367 aaKnown RBP6.53□□□□□ -1.36
CD44-221ENST00000526000 PIH1D2Q8WWB5 315 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 STARD8Q92502 1023 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 SCRN2Q96FV2 425 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 MRFAP1L1Q96HT8 127 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 SLC45A3Q96JT2 553 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 BTBD6Q96KE9 485 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 PSKH2Q96QS6 385 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 NUDCD1Q96RS6 583 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 DDA1Q9BW61 102 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 ASPSCR1Q9BZE9 553 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 SPRY4Q9C004 299 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 RBSNQ9H1K0 784 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 PRDM8Q9NQV8 689 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 PARVAQ9NVD7 372 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 DONSONQ9NYP3 566 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 CNOT8Q9UFF9 292 aaKnown RBP6.53□□□□□ -1.36
CD44-221ENST00000526000 TBC1D29Q9UFV1 150 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 TP53TG5Q9Y2B4 290 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 SLC17A4Q9Y2C5 497 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 TTLL3Q9Y4R7 772 aa6.53□□□□□ -1.36
CD44-221ENST00000526000 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.53□□□□□ -1.36
CD44-221ENST00000526000 SDK2Q58EX2 2172 aa6.52□□□□□ -1.36
CD44-221ENST00000526000 TLN1Q9Y490 2541 aaKnown RBP6.52□□□□□ -1.37
CD44-221ENST00000526000 LRRK1Q38SD2 2015 aa6.52□□□□□ -1.37
CD44-221ENST00000526000 A0A1W2PQJ5 194 aa6.52□□□□□ -1.37
CD44-221ENST00000526000 PIPSLA2A3N6 862 aa6.52□□□□□ -1.37
CD44-221ENST00000526000 CDC14CA4D256 554 aa6.52□□□□□ -1.37
CD44-221ENST00000526000 GOLGA6L3A6NEY3 463 aa6.52□□□□□ -1.37
CD44-221ENST00000526000 H3BRJ5 948 aa6.52□□□□□ -1.37
CD44-221ENST00000526000 KIF1CO43896 1103 aaKnown RBP6.52□□□□□ -1.37
CD44-221ENST00000526000 MAFKO60675 156 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms