RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 POLE2P56282 527 aa20.91■□□□□ 0.94
SQSTM1-210ENST00000506042 SRSF6Q13247 344 aaKnown RBP20.91■□□□□ 0.94
SQSTM1-210ENST00000506042 SMTNL2Q2TAL5 461 aa20.91■□□□□ 0.94
SQSTM1-210ENST00000506042 LRRC66Q68CR7 880 aa20.91■□□□□ 0.94
SQSTM1-210ENST00000506042 FUCA2Q9BTY2 467 aa20.91■□□□□ 0.94
SQSTM1-210ENST00000506042 SLC12A9Q9BXP2 914 aa20.91■□□□□ 0.94
SQSTM1-210ENST00000506042 SARS2Q9NP81 518 aaKnown RBP20.91■□□□□ 0.94
SQSTM1-210ENST00000506042 B3GALT1Q9Y5Z6 326 aa20.91■□□□□ 0.94
SQSTM1-210ENST00000506042 PPM1DO15297 605 aa20.9■□□□□ 0.94
SQSTM1-210ENST00000506042 CTPS1P17812 591 aa20.9■□□□□ 0.94
SQSTM1-210ENST00000506042 LHCGRP22888 699 aa20.9■□□□□ 0.94
SQSTM1-210ENST00000506042 ANP32AP39687 249 aaKnown RBP20.9■□□□□ 0.94
SQSTM1-210ENST00000506042 POLD2P49005 469 aa20.9■□□□□ 0.94
SQSTM1-210ENST00000506042 MAXP61244 160 aa20.9■□□□□ 0.94
SQSTM1-210ENST00000506042 CYP4F2P78329 520 aa20.9■□□□□ 0.94
SQSTM1-210ENST00000506042 PYCR3Q53H96 274 aa20.9■□□□□ 0.94
SQSTM1-210ENST00000506042 TDRD12Q587J7 1177 aaKnown RBP20.9■□□□□ 0.94
SQSTM1-210ENST00000506042 MARK2Q7KZI7 788 aaKnown RBP20.9■□□□□ 0.94
SQSTM1-210ENST00000506042 TECPR1Q7Z6L1 1165 aa20.9■□□□□ 0.94
SQSTM1-210ENST00000506042 PHYKPLQ8IUZ5 450 aa20.9■□□□□ 0.94
SQSTM1-210ENST00000506042 MAP7D3Q8IWC1 876 aa20.9■□□□□ 0.94
SQSTM1-210ENST00000506042 SFTPA2Q8IWL1 248 aa20.9■□□□□ 0.94
SQSTM1-210ENST00000506042 CBARPQ8N350 705 aaPredicted RBP20.9■□□□□ 0.94
SQSTM1-210ENST00000506042 AOPEPQ8N6M6 819 aa20.9■□□□□ 0.94
SQSTM1-210ENST00000506042 ARFGAP1Q8N6T3 406 aa20.9■□□□□ 0.94
SQSTM1-210ENST00000506042 SLC45A3Q96JT2 553 aa20.9■□□□□ 0.94
SQSTM1-210ENST00000506042 ZNF830Q96NB3 372 aaPredicted RBP20.9■□□□□ 0.94
SQSTM1-210ENST00000506042 SYT11Q9BT88 431 aa20.9■□□□□ 0.94
SQSTM1-210ENST00000506042 ABCG8Q9H221 673 aa20.9■□□□□ 0.94
SQSTM1-210ENST00000506042 PKD2L2Q9NZM6 624 aa20.9■□□□□ 0.94
SQSTM1-210ENST00000506042 LCMT1Q9UIC8 334 aa20.9■□□□□ 0.94
SQSTM1-210ENST00000506042 TTLL3Q9Y4R7 772 aa20.9■□□□□ 0.94
SQSTM1-210ENST00000506042 PCDHB3Q9Y5E6 796 aa20.9■□□□□ 0.94
SQSTM1-210ENST00000506042 AHCTF1Q8WYP5 2266 aa20.89■□□□□ 0.94
SQSTM1-210ENST00000506042 MYO18BQ8IUG5 2567 aa20.89■□□□□ 0.93
SQSTM1-210ENST00000506042 KIR2DS5A0A0G2JLQ3 304 aa20.89■□□□□ 0.93
SQSTM1-210ENST00000506042 A0A0G2JNG1 304 aa20.89■□□□□ 0.93
SQSTM1-210ENST00000506042 A0A0J9YYE9 177 aa20.89■□□□□ 0.93
SQSTM1-210ENST00000506042 RGSL1A5PLK6 1076 aa20.89■□□□□ 0.93
SQSTM1-210ENST00000506042 KIR2DS3K7RE56 304 aa20.89■□□□□ 0.93
SQSTM1-210ENST00000506042 TRBC1P01850 177 aa20.89■□□□□ 0.93
SQSTM1-210ENST00000506042 LIFP15018 202 aa20.89■□□□□ 0.93
SQSTM1-210ENST00000506042 TPM4P67936 248 aa20.89■□□□□ 0.93
SQSTM1-210ENST00000506042 TLE1Q04724 770 aa20.89■□□□□ 0.93
SQSTM1-210ENST00000506042 KIR2DS5Q14953 304 aa20.89■□□□□ 0.93
SQSTM1-210ENST00000506042 IFI16Q16666 785 aaKnown RBP20.89■□□□□ 0.93
SQSTM1-210ENST00000506042 CCDC183Q5T5S1 534 aa20.89■□□□□ 0.93
SQSTM1-210ENST00000506042 NKAIN2Q5VXU1 208 aa20.89■□□□□ 0.93
SQSTM1-210ENST00000506042 PLXDC1Q8IUK5 500 aa20.89■□□□□ 0.93
SQSTM1-210ENST00000506042 PELI3Q8N2H9 469 aa20.89■□□□□ 0.93
SQSTM1-210ENST00000506042 SFRP1Q8N474 314 aa20.89■□□□□ 0.93
SQSTM1-210ENST00000506042 C9orf43Q8TAL5 461 aaPredicted RBP20.89■□□□□ 0.93
SQSTM1-210ENST00000506042 SLC37A2Q8TED4 501 aa20.89■□□□□ 0.93
SQSTM1-210ENST00000506042 PATE1Q8WXA2 126 aa20.89■□□□□ 0.93
SQSTM1-210ENST00000506042 ANP32EQ9BTT0 268 aa20.89■□□□□ 0.93
SQSTM1-210ENST00000506042 ADGRE3Q9BY15 652 aa20.89■□□□□ 0.93
SQSTM1-210ENST00000506042 RAD18Q9NS91 495 aa20.89■□□□□ 0.93
SQSTM1-210ENST00000506042 CD84Q9UIB8 345 aa20.89■□□□□ 0.93
SQSTM1-210ENST00000506042 TENM4Q6N022 2769 aa20.88■□□□□ 0.93
SQSTM1-210ENST00000506042 TTC24A2A3L6 582 aaPredicted RBP20.88■□□□□ 0.93
SQSTM1-210ENST00000506042 MX2P20592 715 aa20.88■□□□□ 0.93
SQSTM1-210ENST00000506042 MC2RQ01718 297 aa20.88■□□□□ 0.93
SQSTM1-210ENST00000506042 ABHD18Q0P651 414 aa20.88■□□□□ 0.93
SQSTM1-210ENST00000506042 SNAP47Q5SQN1 464 aa20.88■□□□□ 0.93
SQSTM1-210ENST00000506042 TSPAN33Q86UF1 283 aa20.88■□□□□ 0.93
SQSTM1-210ENST00000506042 PGBD5Q8N414 524 aa20.88■□□□□ 0.93
SQSTM1-210ENST00000506042 PIH1D2Q8WWB5 315 aa20.88■□□□□ 0.93
SQSTM1-210ENST00000506042 NCSTNQ92542 709 aa20.88■□□□□ 0.93
SQSTM1-210ENST00000506042 RTN4Q9NQC3 1192 aaKnown RBP20.88■□□□□ 0.93
SQSTM1-210ENST00000506042 FBXO8Q9NRD0 319 aa20.88■□□□□ 0.93
SQSTM1-210ENST00000506042 PDP2Q9P2J9 529 aa20.88■□□□□ 0.93
SQSTM1-210ENST00000506042 TMEM98Q9Y2Y6 226 aa20.88■□□□□ 0.93
SQSTM1-210ENST00000506042 GPR89AB7ZAQ6 455 aa20.87■□□□□ 0.93
SQSTM1-210ENST00000506042 MYO1FO00160 1098 aa20.87■□□□□ 0.93
SQSTM1-210ENST00000506042 POLR1CO15160 346 aaPredicted RBP20.87■□□□□ 0.93
SQSTM1-210ENST00000506042 MTA2O94776 668 aa20.87■□□□□ 0.93
SQSTM1-210ENST00000506042 MAP3K6O95382 1288 aa20.87■□□□□ 0.93
SQSTM1-210ENST00000506042 NTRK1P04629 796 aa20.87■□□□□ 0.93
SQSTM1-210ENST00000506042 GPR89BP0CG08 455 aa20.87■□□□□ 0.93
SQSTM1-210ENST00000506042 RARAP10276 462 aa20.87■□□□□ 0.93
SQSTM1-210ENST00000506042 NFKB2Q00653 900 aa20.87■□□□□ 0.93
SQSTM1-210ENST00000506042 ANKRD20A8PQ5CZ79 823 aa20.87■□□□□ 0.93
SQSTM1-210ENST00000506042 ANKS6Q68DC2 871 aa20.87■□□□□ 0.93
SQSTM1-210ENST00000506042 CYP4V2Q6ZWL3 525 aaPredicted RBP20.87■□□□□ 0.93
SQSTM1-210ENST00000506042 CHST15Q7LFX5 561 aaPredicted RBP20.87■□□□□ 0.93
SQSTM1-210ENST00000506042 LYSMD3Q7Z3D4 306 aa20.87■□□□□ 0.93
SQSTM1-210ENST00000506042 ZNF571Q7Z3V5 609 aaPredicted RBP20.87■□□□□ 0.93
SQSTM1-210ENST00000506042 ESX1Q8N693 406 aa20.87■□□□□ 0.93
SQSTM1-210ENST00000506042 TEX26Q8N6G2 289 aa20.87■□□□□ 0.93
SQSTM1-210ENST00000506042 NIPA2Q8N8Q9 360 aa20.87■□□□□ 0.93
SQSTM1-210ENST00000506042 APOBEC4Q8WW27 367 aaKnown RBP20.87■□□□□ 0.93
SQSTM1-210ENST00000506042 HTR3CQ8WXA8 447 aa20.87■□□□□ 0.93
SQSTM1-210ENST00000506042 IQCDQ96DY2 449 aa20.87■□□□□ 0.93
SQSTM1-210ENST00000506042 ISCUQ9H1K1 167 aa20.87■□□□□ 0.93
SQSTM1-210ENST00000506042 PCDH18Q9HCL0 1135 aa20.87■□□□□ 0.93
SQSTM1-210ENST00000506042 ANAPC7Q9UJX3 599 aa20.87■□□□□ 0.93
SQSTM1-210ENST00000506042 PIEZO2Q9H5I5 2752 aa20.87■□□□□ 0.93
SQSTM1-210ENST00000506042 INPP4BO15327 924 aa20.86■□□□□ 0.93
SQSTM1-210ENST00000506042 PEX11BO96011 259 aa20.86■□□□□ 0.93
SQSTM1-210ENST00000506042 FUCA1P04066 466 aa20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms