RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 PEX5LQ8IYB4 626 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 FAM83FQ8NEG4 500 aaPredicted RBP11.67□□□□□ -0.54
HDAC4-210ENST00000493582 DYNC2LI1Q8TCX1 351 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 RNF139Q8WU17 664 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 SLC35F5Q8WV83 523 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 OSCP1Q8WVF1 389 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 FIG4Q92562 907 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 CENPIQ92674 756 aaPredicted RBP11.67□□□□□ -0.54
HDAC4-210ENST00000493582 DSN1Q9H410 356 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 CDHR5Q9HBB8 845 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 RNF146Q9NTX7 359 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 MAP3K20Q9NYL2 800 aaKnown RBP11.67□□□□□ -0.54
HDAC4-210ENST00000493582 AASSQ9UDR5 926 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 N6AMT1Q9Y5N5 214 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 OAS3Q9Y6K5 1087 aaKnown RBP11.67□□□□□ -0.54
HDAC4-210ENST00000493582 SCN4AP35499 1836 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 SPATA31C2B4DYI2 1134 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 SLC22A1O15245 554 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 UPK1BO75841 260 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 SOAT2O75908 522 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 CHRNA1P02708 482 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 KRT8P05787 483 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 ITIH1P19827 911 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 GTF2E2P29084 291 aaKnown RBP11.67□□□□□ -0.54
HDAC4-210ENST00000493582 EFNA5P52803 228 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 LAMTOR4Q0VGL1 99 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 POU6F1Q14863 301 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 RPS6KA2Q15349 733 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 ATF7IP2Q5U623 682 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 KCTD11Q693B1 232 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 MPZL3Q6UWV2 235 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 MIER2Q8N344 545 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 FAR1Q8WVX9 515 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 ITCHQ96J02 903 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 YME1L1Q96TA2 773 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 CNGB3Q9NQW8 809 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 GTF2IRD1Q9UHL9 959 aa11.67□□□□□ -0.54
HDAC4-210ENST00000493582 KIAA1217Q5T5P2 1943 aa11.66□□□□□ -0.54
HDAC4-210ENST00000493582 CENPBD1B2RD01 187 aa11.66□□□□□ -0.54
HDAC4-210ENST00000493582 POLR2EP19388 210 aaKnown RBP11.66□□□□□ -0.54
HDAC4-210ENST00000493582 NFKB1P19838 968 aa11.66□□□□□ -0.54
HDAC4-210ENST00000493582 CYP2B6P20813 491 aa11.66□□□□□ -0.54
HDAC4-210ENST00000493582 HRH2P25021 359 aa11.66□□□□□ -0.54
HDAC4-210ENST00000493582 TUFMP49411 452 aaKnown RBP11.66□□□□□ -0.54
HDAC4-210ENST00000493582 SLC12A2P55011 1212 aa11.66□□□□□ -0.54
HDAC4-210ENST00000493582 PAGE3Q5JUK9 113 aa11.66□□□□□ -0.54
HDAC4-210ENST00000493582 COLEC12Q5KU26 742 aa11.66□□□□□ -0.54
HDAC4-210ENST00000493582 RBM20Q5T481 1227 aaKnown RBP11.66□□□□□ -0.54
HDAC4-210ENST00000493582 BTBD8Q5XKL5 378 aa11.66□□□□□ -0.54
HDAC4-210ENST00000493582 ESRP1Q6NXG1 681 aaKnown RBP11.66□□□□□ -0.54
HDAC4-210ENST00000493582 CCDC81Q6ZN84 652 aa11.66□□□□□ -0.54
HDAC4-210ENST00000493582 GATAD2AQ86YP4 633 aa11.66□□□□□ -0.54
HDAC4-210ENST00000493582 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.66□□□□□ -0.544e-7■■■■■ 40.4
HDAC4-210ENST00000493582 SLIRPQ9GZT3 109 aaKnown RBP11.66□□□□□ -0.54
HDAC4-210ENST00000493582 GSTO2Q9H4Y5 243 aa11.66□□□□□ -0.54
HDAC4-210ENST00000493582 PTPRHQ9HD43 1115 aa11.66□□□□□ -0.54
HDAC4-210ENST00000493582 IGSF5Q9NSI5 407 aa11.66□□□□□ -0.54
HDAC4-210ENST00000493582 DNAJC15Q9Y5T4 150 aa11.66□□□□□ -0.54
HDAC4-210ENST00000493582 NRXN2Q9P2S2 1712 aa11.66□□□□□ -0.54
HDAC4-210ENST00000493582 CCRL2O00421 344 aa11.66□□□□□ -0.54
HDAC4-210ENST00000493582 HCRTO43612 131 aa11.66□□□□□ -0.54
HDAC4-210ENST00000493582 SNX2O60749 519 aa11.66□□□□□ -0.54
HDAC4-210ENST00000493582 KCNC1P48547 511 aa11.66□□□□□ -0.54
HDAC4-210ENST00000493582 NPY2RP49146 381 aa11.66□□□□□ -0.54
HDAC4-210ENST00000493582 NOL9Q5SY16 702 aaKnown RBP11.66□□□□□ -0.54
HDAC4-210ENST00000493582 TXNDC11Q6PKC3 985 aa11.66□□□□□ -0.54
HDAC4-210ENST00000493582 RALGPS2Q86X27 583 aaPredicted RBP11.66□□□□□ -0.54
HDAC4-210ENST00000493582 ABI1Q8IZP0 508 aa11.66□□□□□ -0.54
HDAC4-210ENST00000493582 AKT1S1Q96B36 256 aa11.66□□□□□ -0.54
HDAC4-210ENST00000493582 TEX37Q96LM6 180 aa11.66□□□□□ -0.54
HDAC4-210ENST00000493582 CEP295NLQ96MC4 621 aa11.66□□□□□ -0.54
HDAC4-210ENST00000493582 ZBED2Q9BTP6 218 aa11.66□□□□□ -0.54
HDAC4-210ENST00000493582 CYP3A43Q9HB55 503 aa11.66□□□□□ -0.54
HDAC4-210ENST00000493582 SETD4Q9NVD3 440 aa11.66□□□□□ -0.54
HDAC4-210ENST00000493582 FZD10Q9ULW2 581 aa11.66□□□□□ -0.54
HDAC4-210ENST00000493582 MGAMO43451 1857 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 KLRG2A4D1S0 409 aaPredicted RBP11.65□□□□□ -0.54
HDAC4-210ENST00000493582 FAM172BPA6NC97 362 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 SYCE1LA8MT33 242 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 SLC1A7O00341 560 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 KMOO15229 486 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 SCO2O43819 266 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 DIO3P55073 304 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 FOXA1P55317 472 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 OR4D2P58180 307 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 TECRLQ5HYJ1 363 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 CELF2-AS1Q8N7Q2 184 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 CNIH3Q8TBE1 160 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 BPIFB1Q8TDL5 484 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 RORBQ92753 470 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 ASPSCR1Q9BZE9 553 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 DDX28Q9NUL7 540 aaKnown RBP11.65□□□□□ -0.54
HDAC4-210ENST00000493582 SLC2A6Q9UGQ3 507 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 PRELID1Q9Y255 219 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 CAB39Q9Y376 341 aaPredicted RBP11.65□□□□□ -0.54
HDAC4-210ENST00000493582 TBC1D4O60343 1298 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 DAB1O75553 588 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 UMPSP11172 480 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 PRKACGP22612 351 aa11.65□□□□□ -0.54
HDAC4-210ENST00000493582 SLC1A2P43004 574 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms