RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-231ENST00000488905 KCNK4Q9NYG8 393 aa18.32■□□□□ 0.52
HDAC6-231ENST00000488905 DNPEPQ9ULA0 475 aa18.32■□□□□ 0.52
HDAC6-231ENST00000488905 PCDHGA3Q9Y5H0 932 aa18.32■□□□□ 0.52
HDAC6-231ENST00000488905 ZNF106Q9H2Y7 1883 aaKnown RBP18.32■□□□□ 0.52
HDAC6-231ENST00000488905 IL4RP24394 825 aa18.31■□□□□ 0.52
HDAC6-231ENST00000488905 FASLGP48023 281 aa18.31■□□□□ 0.52
HDAC6-231ENST00000488905 ATP1A2P50993 1020 aa18.31■□□□□ 0.52
HDAC6-231ENST00000488905 STC1P52823 247 aa18.31■□□□□ 0.52
HDAC6-231ENST00000488905 EPHB1P54762 984 aa18.31■□□□□ 0.52
HDAC6-231ENST00000488905 CYP4F2P78329 520 aa18.31■□□□□ 0.52
HDAC6-231ENST00000488905 GPLD1P80108 840 aa18.31■□□□□ 0.52
HDAC6-231ENST00000488905 DSC2Q02487 901 aa18.31■□□□□ 0.52
HDAC6-231ENST00000488905 SQSTM1Q13501 440 aa18.31■□□□□ 0.52
HDAC6-231ENST00000488905 LRP8Q14114 963 aa18.31■□□□□ 0.52
HDAC6-231ENST00000488905 TBR1Q16650 682 aa18.31■□□□□ 0.52
HDAC6-231ENST00000488905 NCBP2-AS2Q69YL0 99 aa18.31■□□□□ 0.52
HDAC6-231ENST00000488905 NLRP8Q86W28 1048 aa18.31■□□□□ 0.52
HDAC6-231ENST00000488905 GALNT13Q8IUC8 556 aa18.31■□□□□ 0.52
HDAC6-231ENST00000488905 AGBL5Q8NDL9 886 aa18.31■□□□□ 0.52
HDAC6-231ENST00000488905 SLC37A2Q8TED4 501 aa18.31■□□□□ 0.52
HDAC6-231ENST00000488905 JPH3Q8WXH2 748 aaPredicted RBP18.31■□□□□ 0.52
HDAC6-231ENST00000488905 MAML1Q92585 1016 aa18.31■□□□□ 0.52
HDAC6-231ENST00000488905 COX14Q96I36 57 aa18.31■□□□□ 0.52
HDAC6-231ENST00000488905 AGAP2Q99490 1192 aa18.31■□□□□ 0.52
HDAC6-231ENST00000488905 TMEM9Q9P0T7 183 aa18.31■□□□□ 0.52
HDAC6-231ENST00000488905 TTLL3Q9Y4R7 772 aa18.31■□□□□ 0.52
HDAC6-231ENST00000488905 BZW2Q9Y6E2 419 aaKnown RBP18.31■□□□□ 0.52
HDAC6-231ENST00000488905 SPENQ96T58 3664 aaKnown RBP18.31■□□□□ 0.52
HDAC6-231ENST00000488905 A0A1W2PQJ5 194 aa18.3■□□□□ 0.52
HDAC6-231ENST00000488905 WISP1O95388 367 aa18.3■□□□□ 0.52
HDAC6-231ENST00000488905 SERPINC1P01008 464 aa18.3■□□□□ 0.52
HDAC6-231ENST00000488905 CYP1A2P05177 515 aa18.3■□□□□ 0.52
HDAC6-231ENST00000488905 ITGB6P18564 788 aa18.3■□□□□ 0.52
HDAC6-231ENST00000488905 MPSTP25325 297 aa18.3■□□□□ 0.52
HDAC6-231ENST00000488905 CSTF2P33240 577 aaKnown RBP eCLIP18.3■□□□□ 0.52
HDAC6-231ENST00000488905 SSR1P43307 286 aaKnown RBP18.3■□□□□ 0.52
HDAC6-231ENST00000488905 KCNC4Q03721 635 aa18.3■□□□□ 0.52
HDAC6-231ENST00000488905 DPYSL3Q14195 570 aa18.3■□□□□ 0.52
HDAC6-231ENST00000488905 IHHQ14623 411 aa18.3■□□□□ 0.52
HDAC6-231ENST00000488905 NR1I3Q14994 352 aa18.3■□□□□ 0.52
HDAC6-231ENST00000488905 PAFAH1B3Q15102 231 aaKnown RBP18.3■□□□□ 0.52
HDAC6-231ENST00000488905 TIGD7Q6NT04 549 aaPredicted RBP18.3■□□□□ 0.52
HDAC6-231ENST00000488905 NRSN1Q8IZ57 195 aa18.3■□□□□ 0.52
HDAC6-231ENST00000488905 SFRP1Q8N474 314 aa18.3■□□□□ 0.52
HDAC6-231ENST00000488905 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP18.3■□□□□ 0.52
HDAC6-231ENST00000488905 ART4Q93070 314 aa18.3■□□□□ 0.52
HDAC6-231ENST00000488905 FUCA2Q9BTY2 467 aa18.3■□□□□ 0.52
HDAC6-231ENST00000488905 DDA1Q9BW61 102 aa18.3■□□□□ 0.52
HDAC6-231ENST00000488905 B3GALT1Q9Y5Z6 326 aa18.3■□□□□ 0.52
HDAC6-231ENST00000488905 INPP4BO15327 924 aa18.29■□□□□ 0.52
HDAC6-231ENST00000488905 MAP3K6O95382 1288 aa18.29■□□□□ 0.52
HDAC6-231ENST00000488905 SERPING1P05155 500 aa18.29■□□□□ 0.52
HDAC6-231ENST00000488905 SFTPCP11686 197 aa18.29■□□□□ 0.52
HDAC6-231ENST00000488905 CA4P22748 312 aa18.29■□□□□ 0.52
HDAC6-231ENST00000488905 CES1P23141 567 aa18.29■□□□□ 0.52
HDAC6-231ENST00000488905 GJC1P36383 396 aa18.29■□□□□ 0.52
HDAC6-231ENST00000488905 ARSEP51690 589 aa18.29■□□□□ 0.52
HDAC6-231ENST00000488905 IQCB1Q15051 598 aa18.29■□□□□ 0.52
HDAC6-231ENST00000488905 HADHQ16836 314 aaKnown RBP18.29■□□□□ 0.52
HDAC6-231ENST00000488905 CCDC122Q5T0U0 273 aa18.29■□□□□ 0.52
HDAC6-231ENST00000488905 ZNF761Q86XN6 746 aaPredicted RBP18.29■□□□□ 0.52
HDAC6-231ENST00000488905 RAVER1Q8IY67 606 aaKnown RBP18.29■□□□□ 0.52
HDAC6-231ENST00000488905 EXD1Q8NHP7 514 aa18.29■□□□□ 0.52
HDAC6-231ENST00000488905 SYN2Q92777 582 aaPredicted RBP18.29■□□□□ 0.52
HDAC6-231ENST00000488905 FATE1Q969F0 183 aa18.29■□□□□ 0.52
HDAC6-231ENST00000488905 NKD1Q969G9 470 aa18.29■□□□□ 0.52
HDAC6-231ENST00000488905 ZNF670Q9BS34 389 aa18.29■□□□□ 0.52
HDAC6-231ENST00000488905 RIOK2Q9BVS4 552 aaKnown RBP18.29■□□□□ 0.52
HDAC6-231ENST00000488905 TRIM4Q9C037 500 aa18.29■□□□□ 0.52
HDAC6-231ENST00000488905 HAUS2Q9NVX0 235 aa18.29■□□□□ 0.52
HDAC6-231ENST00000488905 VPS18Q9P253 973 aa18.29■□□□□ 0.52
HDAC6-231ENST00000488905 AMACRQ9UHK6 382 aa18.29■□□□□ 0.52
HDAC6-231ENST00000488905 CHKBQ9Y259 395 aa18.29■□□□□ 0.52
HDAC6-231ENST00000488905 NAV2Q8IVL1 2488 aa18.28■□□□□ 0.52
HDAC6-231ENST00000488905 MYO1FO00160 1098 aa18.28■□□□□ 0.52
HDAC6-231ENST00000488905 MATN3O15232 486 aa18.28■□□□□ 0.52
HDAC6-231ENST00000488905 DUX1O43812 170 aa18.28■□□□□ 0.52
HDAC6-231ENST00000488905 ASMTLO95671 621 aa18.28■□□□□ 0.52
HDAC6-231ENST00000488905 EML2O95834 649 aa18.28■□□□□ 0.52
HDAC6-231ENST00000488905 PRLP01236 227 aa18.28■□□□□ 0.52
HDAC6-231ENST00000488905 HLA-DQB2P05538 268 aa18.28■□□□□ 0.52
HDAC6-231ENST00000488905 UGT1A3P35503 534 aa18.28■□□□□ 0.52
HDAC6-231ENST00000488905 NFKB2Q00653 900 aa18.28■□□□□ 0.52
HDAC6-231ENST00000488905 IFI16Q16666 785 aaKnown RBP18.28■□□□□ 0.52
HDAC6-231ENST00000488905 TMEM71Q6P5X7 295 aa18.28■□□□□ 0.52
HDAC6-231ENST00000488905 FAM129CQ86XR2 697 aa18.28■□□□□ 0.52
HDAC6-231ENST00000488905 IL22RA1Q8N6P7 574 aa18.28■□□□□ 0.52
HDAC6-231ENST00000488905 LPCAT1Q8NF37 534 aa18.28■□□□□ 0.52
HDAC6-231ENST00000488905 OR10G6Q8NH81 332 aa18.28■□□□□ 0.52
HDAC6-231ENST00000488905 AHCYL2Q96HN2 611 aaKnown RBP18.28■□□□□ 0.52
HDAC6-231ENST00000488905 LYSMD1Q96S90 227 aa18.28■□□□□ 0.52
HDAC6-231ENST00000488905 SLC38A3Q99624 504 aa18.28■□□□□ 0.52
HDAC6-231ENST00000488905 SLC12A9Q9BXP2 914 aa18.28■□□□□ 0.52
HDAC6-231ENST00000488905 RBM22Q9NW64 420 aaKnown RBP eCLIP18.28■□□□□ 0.52
HDAC6-231ENST00000488905 PCYT1BQ9Y5K3 369 aaPredicted RBP18.28■□□□□ 0.52
HDAC6-231ENST00000488905 OAS3Q9Y6K5 1087 aaKnown RBP18.28■□□□□ 0.52
HDAC6-231ENST00000488905 A0A087X0T9 212 aa18.27■□□□□ 0.52
HDAC6-231ENST00000488905 C1orf232A0A0U1RR37 186 aa18.27■□□□□ 0.52
HDAC6-231ENST00000488905 EFCAB7A8K855 629 aa18.27■□□□□ 0.52
HDAC6-231ENST00000488905 B4E171 279 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms