RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 LDB2O43679 373 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 LMNAP02545 664 aaKnown RBP10.25□□□□□ -0.77
SKA1-204ENST00000488454 TSHRP16473 764 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 BPIP17213 487 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 PAMP19021 973 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 CD38P28907 300 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 HOXD12P35452 270 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 SPAM1P38567 509 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 NBL1P41271 181 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 AFF3P51826 1226 aaKnown RBP10.25□□□□□ -0.77
SKA1-204ENST00000488454 C21orf59P57076 290 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 CLDN2P57739 230 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 CRADDP78560 199 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 DPTQ07507 201 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 HLTFQ14527 1009 aaKnown RBP eCLIP10.25□□□□□ -0.77
SKA1-204ENST00000488454 INPP5AQ14642 412 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 IRF4Q15306 451 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 HIF1AQ16665 826 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 BBS9Q3SYG4 887 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 TSTD2Q5T7W7 516 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 LAIR1Q6GTX8 287 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 RAET1GQ6H3X3 334 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 PNCKQ6P2M8 343 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 RFLNAQ6ZTI6 216 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 CEP128Q6ZU80 1094 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 CENPUQ71F23 418 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 ZNF534Q76KX8 674 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 CCNJLQ8IV13 435 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 ZCCHC9Q8N567 271 aaKnown RBP10.25□□□□□ -0.77
SKA1-204ENST00000488454 GPR161Q8N6U8 529 aaKnown RBP10.25□□□□□ -0.77
SKA1-204ENST00000488454 TP53I13Q8NBR0 393 aaPredicted RBP10.25□□□□□ -0.77
SKA1-204ENST00000488454 GPR26Q8NDV2 337 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 UBXN4Q92575 508 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 ART4Q93070 314 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 CENPTQ96BT3 561 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 EID2BQ96D98 161 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 KLHDC7BQ96G42 594 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 SLC6A18Q96N87 628 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 PLEKHG4BQ96PX9 1271 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 NAT9Q9BTE0 207 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 RIOK2Q9BVS4 552 aaKnown RBP10.25□□□□□ -0.77
SKA1-204ENST00000488454 FAM129AQ9BZQ8 928 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 FOXP3Q9BZS1 431 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 TSPYL1Q9H0U9 437 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 EBF2Q9HAK2 575 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 TM9SF3Q9HD45 589 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 ATP13A2Q9NQ11 1180 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 MBNL1Q9NR56 388 aaKnown RBP10.25□□□□□ -0.77
SKA1-204ENST00000488454 CHRAC1Q9NRG0 131 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 FAM86C1Q9NVL1 165 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 MTRF1LQ9UGC7 380 aaKnown RBP10.25□□□□□ -0.77
SKA1-204ENST00000488454 DMGDHQ9UI17 866 aaKnown RBP10.25□□□□□ -0.77
SKA1-204ENST00000488454 PILRBQ9UKJ0 227 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 TCAF1Q9Y4C2 921 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 KCTD3Q9Y597 815 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 SLC30A1Q9Y6M5 507 aa10.25□□□□□ -0.77
SKA1-204ENST00000488454 GLYATL1P3A0A0U1RQE8 302 aa10.24□□□□□ -0.77
SKA1-204ENST00000488454 ESYT3A0FGR9 886 aa10.24□□□□□ -0.77
SKA1-204ENST00000488454 MROH6A6NGR9 719 aa10.24□□□□□ -0.77
SKA1-204ENST00000488454 A6NNZ2 444 aa10.24□□□□□ -0.77
SKA1-204ENST00000488454 C10orf142B7Z368 130 aa10.24□□□□□ -0.77
SKA1-204ENST00000488454 CACNB4O00305 520 aaPredicted RBP10.24□□□□□ -0.77
SKA1-204ENST00000488454 RAD51BO15315 384 aa10.24□□□□□ -0.77
SKA1-204ENST00000488454 EPN2O95208 641 aa10.24□□□□□ -0.77
SKA1-204ENST00000488454 RETP07949 1114 aa10.24□□□□□ -0.77
SKA1-204ENST00000488454 GM2AP17900 193 aa10.24□□□□□ -0.77
SKA1-204ENST00000488454 HTR1BP28222 390 aa10.24□□□□□ -0.77
SKA1-204ENST00000488454 RABIFP47224 123 aa10.24□□□□□ -0.77
SKA1-204ENST00000488454 ZNF140P52738 457 aaPredicted RBP10.24□□□□□ -0.77
SKA1-204ENST00000488454 DCDC1P59894 354 aa10.24□□□□□ -0.77
SKA1-204ENST00000488454 YPEL5P62699 121 aa10.24□□□□□ -0.77
SKA1-204ENST00000488454 PRAMEP78395 509 aa10.24□□□□□ -0.77
SKA1-204ENST00000488454 OVGP1Q12889 678 aa10.24□□□□□ -0.77
SKA1-204ENST00000488454 PDIA2Q13087 525 aaKnown RBP10.24□□□□□ -0.77
SKA1-204ENST00000488454 CUL1Q13616 776 aa10.24□□□□□ -0.77
SKA1-204ENST00000488454 PTK2BQ14289 1009 aa10.24□□□□□ -0.77
SKA1-204ENST00000488454 PTPRCAPQ14761 206 aa10.24□□□□□ -0.77
SKA1-204ENST00000488454 DUOXA1Q1HG43 343 aa10.24□□□□□ -0.77
SKA1-204ENST00000488454 FNBP1LQ5T0N5 605 aa10.24□□□□□ -0.77
SKA1-204ENST00000488454 PDPK2PQ6A1A2 396 aa10.24□□□□□ -0.77
SKA1-204ENST00000488454 ESRP1Q6NXG1 681 aaKnown RBP10.24□□□□□ -0.77
SKA1-204ENST00000488454 Q6ZSR6 202 aa10.24□□□□□ -0.77
SKA1-204ENST00000488454 PTAR1Q7Z6K3 402 aaPredicted RBP10.24□□□□□ -0.77
SKA1-204ENST00000488454 IQCHQ86VS3 1027 aa10.24□□□□□ -0.77
SKA1-204ENST00000488454 DCP2Q8IU60 420 aaKnown RBP10.24□□□□□ -0.77
SKA1-204ENST00000488454 TRAM1L1Q8N609 369 aa10.24□□□□□ -0.77
SKA1-204ENST00000488454 MFSD2AQ8NA29 543 aa10.24□□□□□ -0.77
SKA1-204ENST00000488454 TMEM145Q8NBT3 493 aa10.24□□□□□ -0.77
SKA1-204ENST00000488454 OR13C4Q8NGS5 318 aa10.24□□□□□ -0.77
SKA1-204ENST00000488454 OR6P1Q8NGX9 317 aa10.24□□□□□ -0.77
SKA1-204ENST00000488454 SEC14L1Q92503 715 aa10.24□□□□□ -0.77
SKA1-204ENST00000488454 PEX13Q92968 403 aa10.24□□□□□ -0.77
SKA1-204ENST00000488454 SCAMP4Q969E2 229 aa10.24□□□□□ -0.77
SKA1-204ENST00000488454 LRRC39Q96DD0 335 aa10.24□□□□□ -0.77
SKA1-204ENST00000488454 STAMBPL1Q96FJ0 436 aa10.24□□□□□ -0.77
SKA1-204ENST00000488454 DNAJC1Q96KC8 554 aaKnown RBP10.24□□□□□ -0.77
SKA1-204ENST00000488454 BMFQ96LC9 184 aa10.24□□□□□ -0.77
SKA1-204ENST00000488454 KLF6Q99612 283 aaPredicted RBP10.24□□□□□ -0.77
SKA1-204ENST00000488454 TTC1Q99614 292 aa10.24□□□□□ -0.77
SKA1-204ENST00000488454 ORAI3Q9BRQ5 295 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms