RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 MMP2P08253 660 aa12.18□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 FGF3P11487 239 aaPredicted RBP12.18□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 ITGB6P18564 788 aa12.18□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 ALDH4A1P30038 563 aa12.18□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 GPR1P46091 355 aa12.18□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 UBASH3AP57075 661 aa12.18□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 TAS2R40P59535 323 aa12.18□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 DSC2Q02487 901 aa12.18□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 PEX6Q13608 980 aa12.18□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 KRT81Q14533 505 aa12.18□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 PDK2Q15119 407 aa12.18□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 HADHQ16836 314 aaKnown RBP12.18□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 CCDC122Q5T0U0 273 aa12.18□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.18□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 TIGD7Q6NT04 549 aaPredicted RBP12.18□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 OR4D9Q8NGE8 314 aa12.18□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 EXD1Q8NHP7 514 aa12.18□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 ZNF564Q8TBZ8 553 aaPredicted RBP12.18□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 SGF29Q96ES7 293 aa12.18□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 SPRY4Q9C004 299 aa12.18□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 RBM22Q9NW64 420 aaKnown RBP eCLIP12.18□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 CD84Q9UIB8 345 aa12.18□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 CHKBQ9Y259 395 aa12.18□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 LUC7L2Q9Y383 392 aaKnown RBP12.18□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 A6NCN8 305 aa12.17□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 RHPN2P1A8MT19 583 aa12.17□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 J3QKU1 62 aa12.17□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 CLDN7O95471 211 aa12.17□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 EML2O95834 649 aa12.17□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 HLA-DQB2P05538 268 aa12.17□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 THRAP10827 490 aa12.17□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 KRT10P13645 584 aa12.17□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 CSF2RBP32927 897 aa12.17□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 GBE1Q04446 702 aa12.17□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 LRP8Q14114 963 aa12.17□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 AMZ1Q400G9 498 aa12.17□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 PHF19Q5T6S3 580 aa12.17□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 HENMT1Q5T8I9 393 aaKnown RBP12.17□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 NKAIN2Q5VXU1 208 aa12.17□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 TMEM71Q6P5X7 295 aa12.17□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 TRIM74Q86UV6 250 aa12.17□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 NDUFAF2Q8N183 169 aa12.17□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 SFRP1Q8N474 314 aa12.17□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 CNTD1Q8N815 330 aa12.17□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 RCBTB1Q8NDN9 531 aa12.17□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 PMEPA1Q969W9 287 aa12.17□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 EID2BQ96D98 161 aa12.17□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 HDAC11Q96DB2 347 aa12.17□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 OR2M4Q96R27 311 aa12.17□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 DPYSL5Q9BPU6 564 aa12.17□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 RIOK2Q9BVS4 552 aaKnown RBP12.17□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 CDH19Q9H159 772 aa12.17□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 DTLQ9NZJ0 730 aa12.17□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 VPS18Q9P253 973 aa12.17□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 UVRAGQ9P2Y5 699 aa12.17□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 DNPEPQ9ULA0 475 aa12.17□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 PCDHGA4Q9Y5G9 962 aa12.17□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 OAS3Q9Y6K5 1087 aaKnown RBP12.17□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 RGSL1A5PLK6 1076 aa12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 C3orf70A6NLC5 250 aaPredicted RBP12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 ZNF487B1APH4 448 aa12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 ANKRD66B4E2M5 251 aa12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 ZW10O43264 779 aa12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 MAP3K6O95382 1288 aa12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 KDELR1P24390 212 aa12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 CASP14P31944 242 aa12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 ACTR1BP42025 376 aa12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 SPINT3P49223 89 aa12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 MAPK10P53779 464 aa12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 ACTR1AP61163 376 aa12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 GPLD1P80108 840 aa12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 ITKQ08881 620 aa12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 QPCTQ16769 361 aa12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 MAP9Q49MG5 647 aa12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 ARHGAP22Q7Z5H3 698 aa12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 PLD5Q8N7P1 536 aa12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 BMPERQ8N8U9 685 aa12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 KCTD6Q8NC69 237 aa12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 SLC37A2Q8TED4 501 aa12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 LRRN4Q8WUT4 740 aa12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 CPLX3Q8WVH0 158 aa12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 RAPGEF5Q92565 580 aa12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 NKD1Q969G9 470 aa12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 TADA1Q96BN2 335 aa12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 CCDC74BQ96LY2 380 aa12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 RNF157Q96PX1 679 aa12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 TAAR9Q96RI9 348 aa12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 TRIB3Q96RU7 358 aa12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 SLC12A9Q9BXP2 914 aa12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 PACSIN1Q9BY11 444 aa12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 PCDH9Q9HC56 1237 aa12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 STARD5Q9NSY2 213 aa12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 TMEM9Q9P0T7 183 aa12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 SEPT10Q9P0V9 454 aa12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 ADGRG1Q9Y653 693 aa12.16□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 SYCE3A1L190 88 aa12.15□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 GOLGA6CA6NDK9 693 aa12.15□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 GOLGA6BA6NDN3 693 aa12.15□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 FADS2P1A8MWK0 482 aa12.15□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 B4E171 279 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms