RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 TEAD1P28347 426 aa7.96□□□□□ -1.14
USP54-211ENST00000474929 GKP32189 559 aa7.96□□□□□ -1.14
USP54-211ENST00000474929 SEPHS1P49903 392 aa7.96□□□□□ -1.14
USP54-211ENST00000474929 TDGF1P3P51864 188 aa7.96□□□□□ -1.14
USP54-211ENST00000474929 KCNK10P57789 538 aa7.96□□□□□ -1.14
USP54-211ENST00000474929 SH3BP2P78314 561 aa7.96□□□□□ -1.14
USP54-211ENST00000474929 ADAM8P78325 824 aa7.96□□□□□ -1.14
USP54-211ENST00000474929 GNA12Q03113 381 aa7.96□□□□□ -1.14
USP54-211ENST00000474929 NFATC2Q13469 925 aa7.96□□□□□ -1.14
USP54-211ENST00000474929 MEA1Q16626 185 aa7.96□□□□□ -1.14
USP54-211ENST00000474929 SYPL2Q5VXT5 272 aa7.96□□□□□ -1.14
USP54-211ENST00000474929 PWWP2BQ6NUJ5 590 aa7.96□□□□□ -1.14
USP54-211ENST00000474929 PNCKQ6P2M8 343 aa7.96□□□□□ -1.14
USP54-211ENST00000474929 CNNM4Q6P4Q7 775 aa7.96□□□□□ -1.14
USP54-211ENST00000474929 FAM199XQ6PEV8 388 aaPredicted RBP7.96□□□□□ -1.14
USP54-211ENST00000474929 NYAP1Q6ZVC0 841 aa7.96□□□□□ -1.14
USP54-211ENST00000474929 Q71RC1 249 aaPredicted RBP7.96□□□□□ -1.14
USP54-211ENST00000474929 CENPQQ7L2Z9 268 aaPredicted RBP7.96□□□□□ -1.14
USP54-211ENST00000474929 TFAP2DQ7Z6R9 452 aa7.96□□□□□ -1.14
USP54-211ENST00000474929 MRGPREQ86SM8 312 aa7.96□□□□□ -1.14
USP54-211ENST00000474929 ZNF761Q86XN6 746 aaPredicted RBP7.96□□□□□ -1.14
USP54-211ENST00000474929 KMT5CQ86Y97 462 aa7.96□□□□□ -1.14
USP54-211ENST00000474929 SIDT2Q8NBJ9 832 aaKnown RBP7.96□□□□□ -1.14
USP54-211ENST00000474929 FBXL13Q8NEE6 735 aa7.96□□□□□ -1.14
USP54-211ENST00000474929 OR7D4Q8NG98 312 aa7.96□□□□□ -1.14
USP54-211ENST00000474929 DNAJB14Q8TBM8 379 aa7.96□□□□□ -1.14
USP54-211ENST00000474929 KLHL6Q8WZ60 621 aa7.96□□□□□ -1.14
USP54-211ENST00000474929 CPT1BQ92523 772 aa7.96□□□□□ -1.14
USP54-211ENST00000474929 UBXN4Q92575 508 aa7.96□□□□□ -1.14
USP54-211ENST00000474929 MBD6Q96DN6 1003 aa7.96□□□□□ -1.14
USP54-211ENST00000474929 ZSCAN31Q96LW9 406 aaPredicted RBP7.96□□□□□ -1.14
USP54-211ENST00000474929 TRIM56Q9BRZ2 755 aaKnown RBP7.96□□□□□ -1.14
USP54-211ENST00000474929 TTYH3Q9C0H2 523 aa7.96□□□□□ -1.14
USP54-211ENST00000474929 PCDH12Q9NPG4 1184 aa7.96□□□□□ -1.14
USP54-211ENST00000474929 DMAC2Q9NW81 257 aa7.96□□□□□ -1.14
USP54-211ENST00000474929 ST6GALNAC2Q9UJ37 374 aa7.96□□□□□ -1.14
USP54-211ENST00000474929 SLC17A4Q9Y2C5 497 aa7.96□□□□□ -1.14
USP54-211ENST00000474929 C9J4A7 227 aa7.95□□□□□ -1.14
USP54-211ENST00000474929 PIK3R2O00459 728 aa7.95□□□□□ -1.14
USP54-211ENST00000474929 TEX33O43247 280 aa7.95□□□□□ -1.14
USP54-211ENST00000474929 PAGE1O75459 146 aa7.95□□□□□ -1.14
USP54-211ENST00000474929 SCRG1O75711 98 aa7.95□□□□□ -1.14
USP54-211ENST00000474929 CRYABP02511 175 aaKnown RBP7.95□□□□□ -1.14
USP54-211ENST00000474929 CEACAM5P06731 702 aa7.95□□□□□ -1.14
USP54-211ENST00000474929 GCLMP48507 274 aa7.95□□□□□ -1.14
USP54-211ENST00000474929 RPL34P49207 117 aaKnown RBP7.95□□□□□ -1.14
USP54-211ENST00000474929 MXI1P50539 228 aa7.95□□□□□ -1.14
USP54-211ENST00000474929 IRAK1P51617 712 aa7.95□□□□□ -1.14
USP54-211ENST00000474929 NEK4P51957 841 aa7.95□□□□□ -1.14
USP54-211ENST00000474929 ADORA2A-AS1P86434 159 aa7.95□□□□□ -1.14
USP54-211ENST00000474929 AIMP2Q13155 320 aaKnown RBP7.95□□□□□ -1.14
USP54-211ENST00000474929 PRKD1Q15139 912 aaPredicted RBP7.95□□□□□ -1.14
USP54-211ENST00000474929 CNGA2Q16280 664 aa7.95□□□□□ -1.14
USP54-211ENST00000474929 ALFQ53S48 1182 aa7.95□□□□□ -1.14
USP54-211ENST00000474929 IGFL2Q6UWQ7 119 aa7.95□□□□□ -1.14
USP54-211ENST00000474929 UNC13DQ70J99 1090 aa7.95□□□□□ -1.14
USP54-211ENST00000474929 BRAPQ7Z569 592 aa7.95□□□□□ -1.14
USP54-211ENST00000474929 GALNT13Q8IUC8 556 aa7.95□□□□□ -1.14
USP54-211ENST00000474929 TMEM126BQ8IUX1 230 aa7.95□□□□□ -1.14
USP54-211ENST00000474929 LZTR1Q8N653 840 aa7.95□□□□□ -1.14
USP54-211ENST00000474929 ZBTB2Q8N680 514 aa7.95□□□□□ -1.14
USP54-211ENST00000474929 CA5BP1Q8WTZ4 195 aa7.95□□□□□ -1.14
USP54-211ENST00000474929 STK32AQ8WU08 396 aa7.95□□□□□ -1.14
USP54-211ENST00000474929 TEKT4Q8WW24 435 aa7.95□□□□□ -1.14
USP54-211ENST00000474929 TMEM158Q8WZ71 300 aa7.95□□□□□ -1.14
USP54-211ENST00000474929 RMND5BQ96G75 393 aaPredicted RBP7.95□□□□□ -1.14
USP54-211ENST00000474929 MAGED4Q96JG8 741 aa7.95□□□□□ -1.14
USP54-211ENST00000474929 ZNF514Q96K75 400 aaPredicted RBP7.95□□□□□ -1.14
USP54-211ENST00000474929 ZNF641Q96N77 438 aaPredicted RBP7.95□□□□□ -1.14
USP54-211ENST00000474929 TGM7Q96PF1 710 aa7.95□□□□□ -1.14
USP54-211ENST00000474929 GBP5Q96PP8 586 aa7.95□□□□□ -1.14
USP54-211ENST00000474929 DPH2Q9BQC3 489 aaPredicted RBP7.95□□□□□ -1.14
USP54-211ENST00000474929 TEX101Q9BY14 249 aa7.95□□□□□ -1.14
USP54-211ENST00000474929 SIK2Q9H0K1 926 aa7.95□□□□□ -1.14
USP54-211ENST00000474929 MAGEF1Q9HAY2 307 aa7.95□□□□□ -1.14
USP54-211ENST00000474929 ST7Q9NRC1 585 aa7.95□□□□□ -1.14
USP54-211ENST00000474929 ASNSD1Q9NWL6 643 aa7.95□□□□□ -1.14
USP54-211ENST00000474929 RAB20Q9NX57 234 aa7.95□□□□□ -1.14
USP54-211ENST00000474929 CNTRLQ7Z7A1 2325 aa7.95□□□□□ -1.14
USP54-211ENST00000474929 PCM1Q15154 2024 aa7.95□□□□□ -1.14
USP54-211ENST00000474929 IGLV3-10A0A075B6K4 115 aa7.94□□□□□ -1.14
USP54-211ENST00000474929 SYNJ2BP-COX16A0A087WUM0 186 aa7.94□□□□□ -1.14
USP54-211ENST00000474929 IDSB3KWA1 339 aa7.94□□□□□ -1.14
USP54-211ENST00000474929 BUB1BO60566 1050 aaPredicted RBP7.94□□□□□ -1.14
USP54-211ENST00000474929 HSF2BPO75031 334 aa7.94□□□□□ -1.14
USP54-211ENST00000474929 UBXN7O94888 489 aa7.94□□□□□ -1.14
USP54-211ENST00000474929 TIAF1O95411 115 aa7.94□□□□□ -1.14
USP54-211ENST00000474929 MLYCDO95822 493 aa7.94□□□□□ -1.14
USP54-211ENST00000474929 NR3C1P04150 777 aa7.94□□□□□ -1.14
USP54-211ENST00000474929 AMD1P17707 334 aa7.94□□□□□ -1.14
USP54-211ENST00000474929 IDSP22304 550 aa7.94□□□□□ -1.14
USP54-211ENST00000474929 CAPZBP47756 277 aa7.94□□□□□ -1.14
USP54-211ENST00000474929 ARL4DP49703 201 aa7.94□□□□□ -1.14
USP54-211ENST00000474929 DGKQP52824 942 aa7.94□□□□□ -1.14
USP54-211ENST00000474929 GFERP55789 205 aa7.94□□□□□ -1.14
USP54-211ENST00000474929 RHOAP61586 193 aa7.94□□□□□ -1.14
USP54-211ENST00000474929 CDK3Q00526 305 aa7.94□□□□□ -1.14
USP54-211ENST00000474929 CUL2Q13617 745 aa7.94□□□□□ -1.14
USP54-211ENST00000474929 SEPT7Q16181 437 aaKnown RBP7.94□□□□□ -1.14
USP54-211ENST00000474929 CACHD1Q5VU97 1274 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms