RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 UGT1A1P22309 533 aa14.71□□□□□ -0.05
COL9A3-209ENST00000469852 UGT1A4P22310 534 aa14.71□□□□□ -0.05
COL9A3-209ENST00000469852 CD38P28907 300 aa14.71□□□□□ -0.05
COL9A3-209ENST00000469852 UGT1A3P35503 534 aa14.71□□□□□ -0.05
COL9A3-209ENST00000469852 UGT1A5P35504 534 aa14.71□□□□□ -0.05
COL9A3-209ENST00000469852 SPAM1P38567 509 aa14.71□□□□□ -0.05
COL9A3-209ENST00000469852 MPLP40238 635 aa14.71□□□□□ -0.05
COL9A3-209ENST00000469852 CARSP49589 748 aaKnown RBP14.71□□□□□ -0.05
COL9A3-209ENST00000469852 DCDC1P59894 354 aa14.71□□□□□ -0.05
COL9A3-209ENST00000469852 PFN3P60673 137 aa14.71□□□□□ -0.05
COL9A3-209ENST00000469852 ACVR1Q04771 509 aa14.71□□□□□ -0.05
COL9A3-209ENST00000469852 STAT4Q14765 748 aa14.71□□□□□ -0.05
COL9A3-209ENST00000469852 SMAD1Q15797 465 aaKnown RBP14.71□□□□□ -0.05
COL9A3-209ENST00000469852 CHRNA6Q15825 494 aa14.71□□□□□ -0.05
COL9A3-209ENST00000469852 HIF1AQ16665 826 aa14.71□□□□□ -0.05
COL9A3-209ENST00000469852 ATP13A5Q4VNC0 1218 aa14.71□□□□□ -0.05
COL9A3-209ENST00000469852 KCTD16Q68DU8 428 aa14.71□□□□□ -0.05
COL9A3-209ENST00000469852 RAET1GQ6H3X3 334 aa14.71□□□□□ -0.05
COL9A3-209ENST00000469852 CASC4Q6P4E1 433 aa14.71□□□□□ -0.05
COL9A3-209ENST00000469852 KYAT3Q6YP21 454 aaKnown RBP14.71□□□□□ -0.05
COL9A3-209ENST00000469852 RAVER1Q8IY67 606 aaKnown RBP14.71□□□□□ -0.05
COL9A3-209ENST00000469852 PNPLA1Q8N8W4 532 aa14.71□□□□□ -0.05
COL9A3-209ENST00000469852 STYXQ8WUJ0 223 aa14.71□□□□□ -0.05
COL9A3-209ENST00000469852 MFSD3Q96ES6 412 aa14.71□□□□□ -0.05
COL9A3-209ENST00000469852 LOXL4Q96JB6 756 aa14.71□□□□□ -0.05
COL9A3-209ENST00000469852 TBATAQ96M53 351 aa14.71□□□□□ -0.05
COL9A3-209ENST00000469852 FCRL3Q96P31 734 aaPredicted RBP14.71□□□□□ -0.05
COL9A3-209ENST00000469852 PLEKHG4BQ96PX9 1271 aa14.71□□□□□ -0.05
COL9A3-209ENST00000469852 SPATA16Q9BXB7 569 aa14.71□□□□□ -0.05
COL9A3-209ENST00000469852 C1QTNF7Q9BXJ2 289 aa14.71□□□□□ -0.05
COL9A3-209ENST00000469852 UGT1A7Q9HAW7 530 aa14.71□□□□□ -0.05
COL9A3-209ENST00000469852 UGT1A10Q9HAW8 530 aa14.71□□□□□ -0.05
COL9A3-209ENST00000469852 UGT1A8Q9HAW9 530 aa14.71□□□□□ -0.05
COL9A3-209ENST00000469852 GDF3Q9NR23 364 aa14.71□□□□□ -0.05
COL9A3-209ENST00000469852 TREX1Q9NSU2 369 aa14.71□□□□□ -0.05
COL9A3-209ENST00000469852 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.71□□□□□ -0.053e-17■□□□□ 11.3
COL9A3-209ENST00000469852 CNOT6Q9ULM6 557 aaKnown RBP14.71□□□□□ -0.05
COL9A3-209ENST00000469852 HS3ST3A1Q9Y663 406 aa14.71□□□□□ -0.05
COL9A3-209ENST00000469852 V9GYY5 206 aaPredicted RBP14.71□□□□□ -0.05
COL9A3-209ENST00000469852 TMEM131Q92545 1883 aa14.71□□□□□ -0.05
COL9A3-209ENST00000469852 OTOGLQ3ZCN5 2332 aa14.71□□□□□ -0.05
COL9A3-209ENST00000469852 DNAH14Q0VDD8 3507 aa14.71□□□□□ -0.06
COL9A3-209ENST00000469852 GLYATL1P3A0A0U1RQE8 302 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 A0A1B0GTW7 788 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 A0A1B0GVT2 93 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 A6NNZ2 444 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 E7ESA3 106 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 INPP4BO15327 924 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 THEGLP0DJG4 465 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 ARNTP27540 789 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 TRIM23P36406 574 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 ELK3P41970 407 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 GPR1P46091 355 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 CDKN1CP49918 316 aaPredicted RBP14.7□□□□□ -0.06
COL9A3-209ENST00000469852 ARL4CP56559 192 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 PDE1BQ01064 536 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 TCEAL6Q6IPX3 200 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 Q6ZSR6 202 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 PTAR1Q7Z6K3 402 aaPredicted RBP14.7□□□□□ -0.06
COL9A3-209ENST00000469852 TRIM74Q86UV6 250 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 NLRP8Q86W28 1048 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 HEATR4Q86WZ0 1026 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 SPATS2Q86XZ4 545 aaKnown RBP14.7□□□□□ -0.06
COL9A3-209ENST00000469852 ANKMY2Q8IV38 441 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 PDIK1LQ8N165 341 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 TRAM1L1Q8N609 369 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 IFT81Q8WYA0 676 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 TCEAL3Q969E4 200 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 HDAC10Q969S8 669 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 CCDC97Q96F63 343 aaPredicted RBP14.7□□□□□ -0.06
COL9A3-209ENST00000469852 CDKN2AIPNLQ96HQ2 116 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 APOOQ9BUR5 198 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 FRMD8Q9BZ67 464 aaPredicted RBP14.7□□□□□ -0.06
COL9A3-209ENST00000469852 FAM96AQ9H5X1 160 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 ANKZF1Q9H8Y5 726 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 MRM3Q9HC36 420 aaKnown RBP14.7□□□□□ -0.06
COL9A3-209ENST00000469852 ARFGAP3Q9NP61 516 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 FAM114A2Q9NRY5 505 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 GPR27Q9NS67 375 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 IL1RAPL1Q9NZN1 696 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 RIMKLBQ9ULI2 386 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 PNMA8BQ9ULN7 279 aaPredicted RBP14.7□□□□□ -0.06
COL9A3-209ENST00000469852 CHMP2BQ9UQN3 213 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 MAD1L1Q9Y6D9 718 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 TEX264Q9Y6I9 313 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 LRP4O75096 1905 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 CACNA1EQ15878 2313 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 RALGAPA1Q6GYQ0 2036 aa14.7□□□□□ -0.06
COL9A3-209ENST00000469852 KNL1Q8NG31 2342 aa14.69□□□□□ -0.06
COL9A3-209ENST00000469852 CCDC162PA2VCL2 907 aa14.69□□□□□ -0.06
COL9A3-209ENST00000469852 H7C0S8 307 aa14.69□□□□□ -0.06
COL9A3-209ENST00000469852 PRAMEF1O95521 474 aa14.69□□□□□ -0.06
COL9A3-209ENST00000469852 LMNAP02545 664 aaKnown RBP14.69□□□□□ -0.06
COL9A3-209ENST00000469852 RETP07949 1114 aa14.69□□□□□ -0.06
COL9A3-209ENST00000469852 TSHRP16473 764 aa14.69□□□□□ -0.06
COL9A3-209ENST00000469852 MC4RP32245 332 aa14.69□□□□□ -0.06
COL9A3-209ENST00000469852 ID4P47928 161 aa14.69□□□□□ -0.06
COL9A3-209ENST00000469852 AFF3P51826 1226 aaKnown RBP14.69□□□□□ -0.06
COL9A3-209ENST00000469852 PDIA2Q13087 525 aaKnown RBP14.69□□□□□ -0.06
COL9A3-209ENST00000469852 ANKRD20A4Q4UJ75 823 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms