RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 PIM3Q86V86 326 aa16.49■□□□□ 0.23
CCDC28B-204ENST00000469003 CCDC13Q8IYE1 715 aa16.49■□□□□ 0.23
CCDC28B-204ENST00000469003 NAGSQ8N159 534 aa16.49■□□□□ 0.23
CCDC28B-204ENST00000469003 TTC9Q92623 222 aa16.49■□□□□ 0.23
CCDC28B-204ENST00000469003 COX14Q96I36 57 aa16.49■□□□□ 0.23
CCDC28B-204ENST00000469003 RNF157Q96PX1 679 aa16.49■□□□□ 0.23
CCDC28B-204ENST00000469003 OR2M4Q96R27 311 aa16.49■□□□□ 0.23
CCDC28B-204ENST00000469003 LYSMD1Q96S90 227 aa16.49■□□□□ 0.23
CCDC28B-204ENST00000469003 CCNL2Q96S94 520 aaPredicted RBP16.49■□□□□ 0.23
CCDC28B-204ENST00000469003 CMKLR1Q99788 373 aa16.49■□□□□ 0.23
CCDC28B-204ENST00000469003 DEF6Q9H4E7 631 aa16.49■□□□□ 0.23
CCDC28B-204ENST00000469003 PCDH9Q9HC56 1237 aa16.49■□□□□ 0.23
CCDC28B-204ENST00000469003 DTLQ9NZJ0 730 aa16.49■□□□□ 0.23
CCDC28B-204ENST00000469003 TMEM98Q9Y2Y6 226 aa16.49■□□□□ 0.23
CCDC28B-204ENST00000469003 MGAQ8IWI9 3026 aa16.49■□□□□ 0.23
CCDC28B-204ENST00000469003 ZNF487B1APH4 448 aa16.48■□□□□ 0.23
CCDC28B-204ENST00000469003 J3QKU1 62 aa16.48■□□□□ 0.23
CCDC28B-204ENST00000469003 CBFA2T2O43439 604 aa16.48■□□□□ 0.23
CCDC28B-204ENST00000469003 CLDN7O95471 211 aa16.48■□□□□ 0.23
CCDC28B-204ENST00000469003 ITIH1P19827 911 aa16.48■□□□□ 0.23
CCDC28B-204ENST00000469003 ALDH4A1P30038 563 aa16.48■□□□□ 0.23
CCDC28B-204ENST00000469003 ACTR1BP42025 376 aa16.48■□□□□ 0.23
CCDC28B-204ENST00000469003 GPR3P46089 330 aa16.48■□□□□ 0.23
CCDC28B-204ENST00000469003 ACTR1AP61163 376 aa16.48■□□□□ 0.23
CCDC28B-204ENST00000469003 CFHR1Q03591 330 aa16.48■□□□□ 0.23
CCDC28B-204ENST00000469003 BIRC2Q13490 618 aa16.48■□□□□ 0.23
CCDC28B-204ENST00000469003 AMZ1Q400G9 498 aa16.48■□□□□ 0.23
CCDC28B-204ENST00000469003 PYCR3Q53H96 274 aa16.48■□□□□ 0.23
CCDC28B-204ENST00000469003 PHF19Q5T6S3 580 aa16.48■□□□□ 0.23
CCDC28B-204ENST00000469003 TRIM74Q86UV6 250 aa16.48■□□□□ 0.23
CCDC28B-204ENST00000469003 CCNYQ8ND76 341 aa16.48■□□□□ 0.23
CCDC28B-204ENST00000469003 LPCAT1Q8NF37 534 aa16.48■□□□□ 0.23
CCDC28B-204ENST00000469003 EXD1Q8NHP7 514 aa16.48■□□□□ 0.23
CCDC28B-204ENST00000469003 LRRN4Q8WUT4 740 aa16.48■□□□□ 0.23
CCDC28B-204ENST00000469003 PATE1Q8WXA2 126 aa16.48■□□□□ 0.23
CCDC28B-204ENST00000469003 RAPGEF5Q92565 580 aa16.48■□□□□ 0.23
CCDC28B-204ENST00000469003 ZNF830Q96NB3 372 aaPredicted RBP16.48■□□□□ 0.23
CCDC28B-204ENST00000469003 AGAP2Q99490 1192 aa16.48■□□□□ 0.23
CCDC28B-204ENST00000469003 RIOK2Q9BVS4 552 aaKnown RBP16.48■□□□□ 0.23
CCDC28B-204ENST00000469003 SEMA6CQ9H3T2 930 aa16.48■□□□□ 0.23
CCDC28B-204ENST00000469003 RDH14Q9HBH5 336 aa16.48■□□□□ 0.23
CCDC28B-204ENST00000469003 ZNHIT6Q9NWK9 470 aaKnown RBP16.48■□□□□ 0.23
CCDC28B-204ENST00000469003 PLEKHM1Q9Y4G2 1056 aa16.48■□□□□ 0.23
CCDC28B-204ENST00000469003 COL6A6A6NMZ7 2263 aa16.48■□□□□ 0.23
CCDC28B-204ENST00000469003 ZFC3H1O60293 1989 aaKnown RBP16.47■□□□□ 0.23
CCDC28B-204ENST00000469003 AKR1B10O60218 316 aa16.47■□□□□ 0.23
CCDC28B-204ENST00000469003 JCHAINP01591 159 aa16.47■□□□□ 0.23
CCDC28B-204ENST00000469003 LIPCP11150 499 aa16.47■□□□□ 0.23
CCDC28B-204ENST00000469003 ETV5P41161 510 aa16.47■□□□□ 0.23
CCDC28B-204ENST00000469003 PPIDQ08752 370 aaKnown RBP16.47■□□□□ 0.23
CCDC28B-204ENST00000469003 MESDQ14696 234 aa16.47■□□□□ 0.23
CCDC28B-204ENST00000469003 VSIG1Q86XK7 387 aa16.47■□□□□ 0.23
CCDC28B-204ENST00000469003 GALNT13Q8IUC8 556 aa16.47■□□□□ 0.23
CCDC28B-204ENST00000469003 AKAP7Q9P0M2 348 aaPredicted RBP16.47■□□□□ 0.23
CCDC28B-204ENST00000469003 ATMQ13315 3056 aa16.47■□□□□ 0.23
CCDC28B-204ENST00000469003 PRAMEF33A0A0G2JMD5 474 aa16.46■□□□□ 0.23
CCDC28B-204ENST00000469003 C1orf232A0A0U1RR37 186 aa16.46■□□□□ 0.23
CCDC28B-204ENST00000469003 LRRD1A4D1F6 860 aa16.46■□□□□ 0.23
CCDC28B-204ENST00000469003 KCNK1O00180 336 aa16.46■□□□□ 0.23
CCDC28B-204ENST00000469003 AGRPO00253 132 aa16.46■□□□□ 0.23
CCDC28B-204ENST00000469003 PPM1DO15297 605 aa16.46■□□□□ 0.23
CCDC28B-204ENST00000469003 INPP4BO15327 924 aa16.46■□□□□ 0.23
CCDC28B-204ENST00000469003 PRAMEF10O60809 474 aa16.46■□□□□ 0.23
CCDC28B-204ENST00000469003 MMP2P08253 660 aa16.46■□□□□ 0.23
CCDC28B-204ENST00000469003 CD1CP29017 333 aa16.46■□□□□ 0.23
CCDC28B-204ENST00000469003 CD86P42081 329 aa16.46■□□□□ 0.23
CCDC28B-204ENST00000469003 ARHGAP25P42331 645 aa16.46■□□□□ 0.23
CCDC28B-204ENST00000469003 IFI35P80217 286 aaPredicted RBP16.46■□□□□ 0.23
CCDC28B-204ENST00000469003 LRP8Q14114 963 aa16.46■□□□□ 0.23
CCDC28B-204ENST00000469003 C16orf72Q14CZ0 275 aa16.46■□□□□ 0.23
CCDC28B-204ENST00000469003 QPCTQ16769 361 aa16.46■□□□□ 0.23
CCDC28B-204ENST00000469003 ZNF574Q6ZN55 896 aaPredicted RBP16.46■□□□□ 0.23
CCDC28B-204ENST00000469003 USP53Q70EK8 1073 aa16.46■□□□□ 0.23
CCDC28B-204ENST00000469003 MARK2Q7KZI7 788 aaKnown RBP16.46■□□□□ 0.23
CCDC28B-204ENST00000469003 PLD5Q8N7P1 536 aa16.46■□□□□ 0.23
CCDC28B-204ENST00000469003 SLC35G2Q8TBE7 412 aa16.46■□□□□ 0.23
CCDC28B-204ENST00000469003 USP7Q93009 1102 aa16.46■□□□□ 0.23
CCDC28B-204ENST00000469003 WDR24Q96S15 920 aa16.46■□□□□ 0.23
CCDC28B-204ENST00000469003 NUDT22Q9BRQ3 303 aa16.46■□□□□ 0.23
CCDC28B-204ENST00000469003 MLPHQ9BV36 600 aaPredicted RBP16.46■□□□□ 0.23
CCDC28B-204ENST00000469003 B3GNT4Q9C0J1 378 aa16.46■□□□□ 0.23
CCDC28B-204ENST00000469003 PKD2L2Q9NZM6 624 aa16.46■□□□□ 0.23
CCDC28B-204ENST00000469003 VPS18Q9P253 973 aa16.46■□□□□ 0.23
CCDC28B-204ENST00000469003 IGHV5-10-1A0A0J9YXX1 117 aa16.45■□□□□ 0.22
CCDC28B-204ENST00000469003 RGSL1A5PLK6 1076 aa16.45■□□□□ 0.22
CCDC28B-204ENST00000469003 C3orf70A6NLC5 250 aaPredicted RBP16.45■□□□□ 0.22
CCDC28B-204ENST00000469003 ANKRD66B4E2M5 251 aa16.45■□□□□ 0.22
CCDC28B-204ENST00000469003 HGSO14964 777 aaPredicted RBP16.45■□□□□ 0.22
CCDC28B-204ENST00000469003 EFSO43281 561 aa16.45■□□□□ 0.22
CCDC28B-204ENST00000469003 DNAJC6O75061 913 aa16.45■□□□□ 0.22
CCDC28B-204ENST00000469003 ASMTLO95671 621 aa16.45■□□□□ 0.22
CCDC28B-204ENST00000469003 TPM1P09493 284 aa16.45■□□□□ 0.22
CCDC28B-204ENST00000469003 SPINT3P49223 89 aa16.45■□□□□ 0.22
CCDC28B-204ENST00000469003 MAPK10P53779 464 aa16.45■□□□□ 0.22
CCDC28B-204ENST00000469003 ZBTB17Q13105 803 aa16.45■□□□□ 0.22
CCDC28B-204ENST00000469003 SQSTM1Q13501 440 aa16.45■□□□□ 0.22
CCDC28B-204ENST00000469003 TGIF1Q15583 401 aa16.45■□□□□ 0.22
CCDC28B-204ENST00000469003 HENMT1Q5T8I9 393 aaKnown RBP16.45■□□□□ 0.22
CCDC28B-204ENST00000469003 KIAA1614Q5VZ46 1190 aa16.45■□□□□ 0.22
CCDC28B-204ENST00000469003 SLC9A4Q6AI14 798 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms