RNA–Protein interactions for RNA: ENST00000466538.1

CDC42BPA-211, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 3

Gene CDC42BPA, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-211ENST00000466538 ATP2A1O14983 1001 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 SMAD9O15198 467 aaKnown RBP4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 RGS14O43566 566 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 ZNF500O60304 480 aaPredicted RBP4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 ZIC3O60481 467 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 GAGE7O76087 117 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 TPOP07202 933 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 TUBBP07437 444 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 GAGE12FP0CL80 117 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 GAGE12GP0CL81 117 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 GAGE12IP0CL82 117 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 PSG1P11464 419 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 HOXB2P14652 356 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 AMTP48728 403 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 MMP14P50281 582 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 MXI1P50539 228 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 PSMC6P62333 389 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 CSNK2A1P68400 391 aaPredicted RBP4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 PPATQ06203 517 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 SREBF2Q12772 1141 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 GAGE1Q13065 139 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 GAGE4Q13068 117 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 GPS2Q13227 327 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 HNF4GQ14541 408 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 EFHC1Q5JVL4 640 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 DCST1Q5T197 706 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 FRG2Q64ET8 278 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 RPUSD3Q6P087 351 aaKnown RBP4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 PDXDC1Q6P996 788 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 B3GNT6Q6ZMB0 384 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 CLEC17AQ6ZS10 378 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 KBTBD6Q86V97 674 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 ZC3HC1Q86WB0 502 aaKnown RBP4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 CCDC191Q8NCU4 936 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 APPL2Q8NEU8 664 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 CSNK2A3Q8NEV1 391 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 WFIKKN2Q8TEU8 576 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 EGLN2Q96KS0 407 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 GCNAQ96QF7 691 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 BAG1Q99933 345 aaPredicted RBP4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 HAUS8Q9BT25 410 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 APOL6Q9BWW8 343 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 RBM38Q9H0Z9 239 aaKnown RBP4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 C17orf75Q9HAS0 396 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 CNGB3Q9NQW8 809 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 CPSF2Q9P2I0 782 aaKnown RBP4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 NFKBIL1Q9UBC1 381 aaPredicted RBP4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 DNAJB4Q9UDY4 337 aa4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 AGO1Q9UL18 857 aaKnown RBP4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 PTRH2Q9Y3E5 179 aaKnown RBP4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 MAGED1Q9Y5V3 778 aaPredicted RBP4.39□□□□□ -1.71
CDC42BPA-211ENST00000466538 CPED1A4D0V7 1026 aa4.38□□□□□ -1.71
CDC42BPA-211ENST00000466538 MAP2K7O14733 419 aa4.38□□□□□ -1.71
CDC42BPA-211ENST00000466538 ADAMDEC1O15204 470 aa4.38□□□□□ -1.71
CDC42BPA-211ENST00000466538 SPINT2O43291 252 aa4.38□□□□□ -1.71
CDC42BPA-211ENST00000466538 ADAM20O43506 726 aa4.38□□□□□ -1.71
CDC42BPA-211ENST00000466538 G6PDP11413 515 aa4.38□□□□□ -1.71
CDC42BPA-211ENST00000466538 TRIM21P19474 475 aaKnown RBP4.38□□□□□ -1.71
CDC42BPA-211ENST00000466538 MSH2P43246 934 aa4.38□□□□□ -1.71
CDC42BPA-211ENST00000466538 LIG4P49917 911 aa4.38□□□□□ -1.71
CDC42BPA-211ENST00000466538 PGGT1BP53609 377 aa4.38□□□□□ -1.71
CDC42BPA-211ENST00000466538 MRPS21P82921 87 aaKnown RBP4.38□□□□□ -1.71
CDC42BPA-211ENST00000466538 GRSF1Q12849 480 aaKnown RBP eCLIP4.38□□□□□ -1.71
CDC42BPA-211ENST00000466538 AIMP1Q12904 312 aaKnown RBP4.38□□□□□ -1.71
CDC42BPA-211ENST00000466538 RASA2Q15283 850 aa4.38□□□□□ -1.71
CDC42BPA-211ENST00000466538 TMEM266Q2M3C6 531 aa4.38□□□□□ -1.71
CDC42BPA-211ENST00000466538 LEXMQ3ZCV2 418 aa4.38□□□□□ -1.71
CDC42BPA-211ENST00000466538 TDRD12Q587J7 1177 aaKnown RBP4.38□□□□□ -1.71
CDC42BPA-211ENST00000466538 KCTD18Q6PI47 426 aaPredicted RBP4.38□□□□□ -1.71
CDC42BPA-211ENST00000466538 LINC00346Q8IVM7 164 aa4.38□□□□□ -1.71
CDC42BPA-211ENST00000466538 SCYL3Q8IZE3 742 aa4.38□□□□□ -1.71
CDC42BPA-211ENST00000466538 MINDY1Q8N5J2 469 aa4.38□□□□□ -1.71
CDC42BPA-211ENST00000466538 NRACQ8N912 160 aa4.38□□□□□ -1.71
CDC42BPA-211ENST00000466538 POGLUT1Q8NBL1 392 aa4.38□□□□□ -1.71
CDC42BPA-211ENST00000466538 MCUQ8NE86 351 aa4.38□□□□□ -1.71
CDC42BPA-211ENST00000466538 ADAMTS14Q8WXS8 1223 aa4.38□□□□□ -1.71
CDC42BPA-211ENST00000466538 GAD1Q99259 594 aa4.38□□□□□ -1.71
CDC42BPA-211ENST00000466538 KXD1Q9BQD3 176 aa4.38□□□□□ -1.71
CDC42BPA-211ENST00000466538 SLC25A33Q9BSK2 321 aa4.38□□□□□ -1.71
CDC42BPA-211ENST00000466538 DBNLQ9UJU6 430 aaKnown RBP4.38□□□□□ -1.71
CDC42BPA-211ENST00000466538 PPIEQ9UNP9 301 aaKnown RBP4.38□□□□□ -1.71
CDC42BPA-211ENST00000466538 FAM169AQ9Y6X4 670 aa4.38□□□□□ -1.71
CDC42BPA-211ENST00000466538 COL3A1P02461 1466 aaPredicted RBP4.37□□□□□ -1.71
CDC42BPA-211ENST00000466538 A0A1W2PR77 199 aa4.37□□□□□ -1.71
CDC42BPA-211ENST00000466538 B4DGG1 531 aa4.37□□□□□ -1.71
CDC42BPA-211ENST00000466538 INAFM1C9JVW0 142 aa4.37□□□□□ -1.71
CDC42BPA-211ENST00000466538 TNFRSF13BO14836 293 aaPredicted RBP4.37□□□□□ -1.71
CDC42BPA-211ENST00000466538 TIMM23O14925 209 aa4.37□□□□□ -1.71
CDC42BPA-211ENST00000466538 ICAM1P05362 532 aa4.37□□□□□ -1.71
CDC42BPA-211ENST00000466538 HOXC6P09630 235 aa4.37□□□□□ -1.71
CDC42BPA-211ENST00000466538 EEF1DP29692 281 aaKnown RBP4.37□□□□□ -1.71
CDC42BPA-211ENST00000466538 EIF2S3P41091 472 aaKnown RBP4.37□□□□□ -1.71
CDC42BPA-211ENST00000466538 ARSEP51690 589 aa4.37□□□□□ -1.71
CDC42BPA-211ENST00000466538 HNRNPH2P55795 449 aaKnown RBP4.37□□□□□ -1.71
CDC42BPA-211ENST00000466538 ABATP80404 500 aa4.37□□□□□ -1.71
CDC42BPA-211ENST00000466538 CXCL9Q07325 125 aa4.37□□□□□ -1.71
CDC42BPA-211ENST00000466538 FOXM1Q08050 763 aa4.37□□□□□ -1.71
CDC42BPA-211ENST00000466538 MAD2L1Q13257 205 aaPredicted RBP4.37□□□□□ -1.71
CDC42BPA-211ENST00000466538 GRAPQ13588 217 aa4.37□□□□□ -1.71
CDC42BPA-211ENST00000466538 EFNB3Q15768 340 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms