RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 MANEALQ5VSG8 457 aa12.4□□□□□ -0.42
HDAC4-208ENST00000463007 ANKRD34AQ69YU3 496 aa12.4□□□□□ -0.42
HDAC4-208ENST00000463007 TBPL2Q6SJ96 375 aa12.4□□□□□ -0.42
HDAC4-208ENST00000463007 ERMP1Q7Z2K6 904 aa12.4□□□□□ -0.42
HDAC4-208ENST00000463007 RDH11Q8TC12 318 aa12.4□□□□□ -0.42
HDAC4-208ENST00000463007 MYLPFQ96A32 169 aa12.4□□□□□ -0.42
HDAC4-208ENST00000463007 FAIMQ9NVQ4 179 aa12.4□□□□□ -0.42
HDAC4-208ENST00000463007 VPS28Q9UK41 221 aa12.4□□□□□ -0.42
HDAC4-208ENST00000463007 NDUFAF1Q9Y375 327 aa12.4□□□□□ -0.42
HDAC4-208ENST00000463007 TCRBV3S1A0A5B6 114 aa12.4□□□□□ -0.42
HDAC4-208ENST00000463007 CASTOR2A6NHX0 329 aa12.4□□□□□ -0.42
HDAC4-208ENST00000463007 ARPC2O15144 300 aa12.4□□□□□ -0.42
HDAC4-208ENST00000463007 XYLBO75191 536 aa12.4□□□□□ -0.42
HDAC4-208ENST00000463007 HLA-DQB2P05538 268 aa12.4□□□□□ -0.42
HDAC4-208ENST00000463007 LTA4HP09960 611 aaKnown RBP12.4□□□□□ -0.42
HDAC4-208ENST00000463007 MATN1P21941 496 aa12.4□□□□□ -0.42
HDAC4-208ENST00000463007 EIF2B2P49770 351 aaKnown RBP12.4□□□□□ -0.42
HDAC4-208ENST00000463007 CDKN2DP55273 166 aa12.4□□□□□ -0.42
HDAC4-208ENST00000463007 LAPTM5Q13571 262 aa12.4□□□□□ -0.42
HDAC4-208ENST00000463007 PPP4R4Q6NUP7 873 aa12.4□□□□□ -0.42
HDAC4-208ENST00000463007 CXCL17Q6UXB2 119 aa12.4□□□□□ -0.42
HDAC4-208ENST00000463007 DNAJC14Q6Y2X3 702 aaPredicted RBP12.4□□□□□ -0.42
HDAC4-208ENST00000463007 STK32CQ86UX6 486 aa12.4□□□□□ -0.42
HDAC4-208ENST00000463007 HS3ST5Q8IZT8 346 aa12.4□□□□□ -0.42
HDAC4-208ENST00000463007 PELI3Q8N2H9 469 aa12.4□□□□□ -0.42
HDAC4-208ENST00000463007 TRIB2Q92519 343 aa12.4□□□□□ -0.42
HDAC4-208ENST00000463007 TEX37Q96LM6 180 aa12.4□□□□□ -0.42
HDAC4-208ENST00000463007 MUS81Q96NY9 551 aa12.4□□□□□ -0.42
HDAC4-208ENST00000463007 ACOX2Q99424 681 aa12.4□□□□□ -0.42
HDAC4-208ENST00000463007 ACBD6Q9BR61 282 aa12.4□□□□□ -0.42
HDAC4-208ENST00000463007 IGSF5Q9NSI5 407 aa12.4□□□□□ -0.42
HDAC4-208ENST00000463007 TBC1D13Q9NVG8 400 aa12.4□□□□□ -0.42
HDAC4-208ENST00000463007 CMTM6Q9NX76 183 aa12.4□□□□□ -0.42
HDAC4-208ENST00000463007 AASSQ9UDR5 926 aa12.4□□□□□ -0.42
HDAC4-208ENST00000463007 DLGAP1O14490 977 aa12.39□□□□□ -0.43
HDAC4-208ENST00000463007 NOBOXO60393 691 aa12.39□□□□□ -0.43
HDAC4-208ENST00000463007 ARSDP51689 593 aa12.39□□□□□ -0.43
HDAC4-208ENST00000463007 HERC3Q15034 1050 aa12.39□□□□□ -0.43
HDAC4-208ENST00000463007 AAK1Q2M2I8 961 aa12.39□□□□□ -0.43
HDAC4-208ENST00000463007 BORAQ6PGQ7 559 aa12.39□□□□□ -0.43
HDAC4-208ENST00000463007 LRRTM3Q86VH5 581 aa12.39□□□□□ -0.43
HDAC4-208ENST00000463007 TMCO5AQ8N6Q1 288 aa12.39□□□□□ -0.43
HDAC4-208ENST00000463007 OR10T2Q8NGX3 314 aa12.39□□□□□ -0.43
HDAC4-208ENST00000463007 BLOC1S5Q8TDH9 187 aa12.39□□□□□ -0.43
HDAC4-208ENST00000463007 ITCHQ96J02 903 aa12.39□□□□□ -0.43
HDAC4-208ENST00000463007 GPATCH1Q9BRR8 931 aaKnown RBP12.39□□□□□ -0.43
HDAC4-208ENST00000463007 KIFC1Q9BW19 673 aa12.39□□□□□ -0.43
HDAC4-208ENST00000463007 RRAGCQ9HB90 399 aa12.39□□□□□ -0.43
HDAC4-208ENST00000463007 MARCH4Q9P2E8 410 aaPredicted RBP12.39□□□□□ -0.43
HDAC4-208ENST00000463007 DNAJC15Q9Y5T4 150 aa12.39□□□□□ -0.43
HDAC4-208ENST00000463007 U3KQV3 271 aa12.39□□□□□ -0.43
HDAC4-208ENST00000463007 NFKBIAP25963 317 aa12.39□□□□□ -0.43
HDAC4-208ENST00000463007 EEF1DP29692 281 aaKnown RBP12.39□□□□□ -0.43
HDAC4-208ENST00000463007 CD86P42081 329 aa12.39□□□□□ -0.43
HDAC4-208ENST00000463007 ZNF33AQ06730 810 aa12.39□□□□□ -0.43
HDAC4-208ENST00000463007 TNK2Q07912 1038 aa12.39□□□□□ -0.43
HDAC4-208ENST00000463007 RFTN1Q14699 578 aaPredicted RBP12.39□□□□□ -0.43
HDAC4-208ENST00000463007 TRIM71Q2Q1W2 868 aaKnown RBP12.39□□□□□ -0.43
HDAC4-208ENST00000463007 PYCR3Q53H96 274 aa12.39□□□□□ -0.43
HDAC4-208ENST00000463007 HECTD2Q5U5R9 776 aa12.39□□□□□ -0.43
HDAC4-208ENST00000463007 TMEM207Q6UWW9 146 aa12.39□□□□□ -0.43
HDAC4-208ENST00000463007 TAC4Q86UU9 113 aa12.39□□□□□ -0.43
HDAC4-208ENST00000463007 ZBTB8BQ8NAP8 495 aaPredicted RBP12.39□□□□□ -0.43
HDAC4-208ENST00000463007 PPM1MQ96MI6 270 aa12.39□□□□□ -0.43
HDAC4-208ENST00000463007 CYP2S1Q96SQ9 504 aa12.39□□□□□ -0.43
HDAC4-208ENST00000463007 SLC39A8Q9C0K1 460 aa12.39□□□□□ -0.43
HDAC4-208ENST00000463007 HIPK3Q9H422 1215 aa12.39□□□□□ -0.43
HDAC4-208ENST00000463007 SARS2Q9NP81 518 aaKnown RBP12.39□□□□□ -0.43
HDAC4-208ENST00000463007 INIPQ9NRY2 104 aa12.39□□□□□ -0.43
HDAC4-208ENST00000463007 SACM1LQ9NTJ5 587 aa12.39□□□□□ -0.43
HDAC4-208ENST00000463007 TMEM181Q9P2C4 612 aa12.39□□□□□ -0.43
HDAC4-208ENST00000463007 IFT80Q9P2H3 777 aaPredicted RBP12.39□□□□□ -0.43
HDAC4-208ENST00000463007 CD300AQ9UGN4 299 aa12.39□□□□□ -0.43
HDAC4-208ENST00000463007 A8MU76 341 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 TNFRSF10BO14763 440 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 SLC10A3P09131 477 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 MAGP20916 626 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 CCR1P32246 355 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 WNT3AP56704 352 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 FPGSQ05932 587 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 GPR162Q16538 588 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 TECRLQ5HYJ1 363 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 SDHAF4Q5VUM1 108 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 CYHR1Q6ZMK1 362 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 ZNF598Q86UK7 904 aaKnown RBP12.38□□□□□ -0.43
HDAC4-208ENST00000463007 COX4I2Q96KJ9 171 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 TSGA13Q96PP4 275 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 KCTD14Q9BQ13 255 aaPredicted RBP12.38□□□□□ -0.43
HDAC4-208ENST00000463007 TRHDEQ9UKU6 1024 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 SLC27A5Q9Y2P5 690 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 FUOMA2VDF0 154 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 SUPT3HB4E1H0 165 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 F9P00740 461 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 PRDX3P30048 256 aaKnown RBP12.38□□□□□ -0.43
HDAC4-208ENST00000463007 ARCN1P48444 511 aaKnown RBP12.38□□□□□ -0.43
HDAC4-208ENST00000463007 CRHR2Q13324 411 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 POLD3Q15054 466 aaPredicted RBP12.38□□□□□ -0.43
HDAC4-208ENST00000463007 ABRAXAS1Q6UWZ7 409 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 LINC00523Q86TU6 105 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 TMEM126BQ8IUX1 230 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms