RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 DDA1Q9BW61 102 aa15.3■□□□□ 0.04
SKA3-204ENST00000462482 THAP2Q9H0W7 228 aa15.3■□□□□ 0.04
SKA3-204ENST00000462482 STARD5Q9NSY2 213 aa15.3■□□□□ 0.04
SKA3-204ENST00000462482 RBM22Q9NW64 420 aaKnown RBP eCLIP15.3■□□□□ 0.045e-6■■□□□ 13.6
SKA3-204ENST00000462482 ZNHIT2Q9UHR6 403 aa15.3■□□□□ 0.04
SKA3-204ENST00000462482 COL27A1Q8IZC6 1860 aaPredicted RBP15.29■□□□□ 0.04
SKA3-204ENST00000462482 MGAQ8IWI9 3026 aa15.29■□□□□ 0.04
SKA3-204ENST00000462482 TRBV23OR9-2A0A075B6M9 112 aa15.29■□□□□ 0.04
SKA3-204ENST00000462482 EFCAB7A8K855 629 aa15.29■□□□□ 0.04
SKA3-204ENST00000462482 PYCARD-AS1I3L0S3 204 aa15.29■□□□□ 0.04
SKA3-204ENST00000462482 MATN3O15232 486 aa15.29■□□□□ 0.04
SKA3-204ENST00000462482 INPP4BO15327 924 aa15.29■□□□□ 0.04
SKA3-204ENST00000462482 FZD6O60353 706 aa15.29■□□□□ 0.04
SKA3-204ENST00000462482 SERPING1P05155 500 aa15.29■□□□□ 0.04
SKA3-204ENST00000462482 THRAP10827 490 aa15.29■□□□□ 0.04
SKA3-204ENST00000462482 MX2P20592 715 aa15.29■□□□□ 0.04
SKA3-204ENST00000462482 MPSTP25325 297 aa15.29■□□□□ 0.04
SKA3-204ENST00000462482 GARSP41250 739 aaKnown RBP15.29■□□□□ 0.04
SKA3-204ENST00000462482 CSRP3P50461 194 aa15.29■□□□□ 0.04
SKA3-204ENST00000462482 STC1P52823 247 aa15.29■□□□□ 0.04
SKA3-204ENST00000462482 RPL26P61254 145 aaKnown RBP15.29■□□□□ 0.04
SKA3-204ENST00000462482 SLC25A11Q02978 314 aaKnown RBP15.29■□□□□ 0.04
SKA3-204ENST00000462482 PTSQ03393 145 aa15.29■□□□□ 0.04
SKA3-204ENST00000462482 GALNT2Q10471 571 aa15.29■□□□□ 0.04
SKA3-204ENST00000462482 PTPRRQ15256 657 aa15.29■□□□□ 0.04
SKA3-204ENST00000462482 TXNRD3NBQ6F5E7 133 aa15.29■□□□□ 0.04
SKA3-204ENST00000462482 TRIM74Q86UV6 250 aa15.29■□□□□ 0.04
SKA3-204ENST00000462482 CACNA2D3Q8IZS8 1091 aa15.29■□□□□ 0.04
SKA3-204ENST00000462482 CCHCR1Q8TD31 782 aa15.29■□□□□ 0.04
SKA3-204ENST00000462482 PTCD2Q8WV60 388 aaKnown RBP15.29■□□□□ 0.04
SKA3-204ENST00000462482 SYN2Q92777 582 aaPredicted RBP15.29■□□□□ 0.04
SKA3-204ENST00000462482 NKD1Q969G9 470 aa15.29■□□□□ 0.04
SKA3-204ENST00000462482 KIAA1143Q96AT1 154 aaPredicted RBP15.29■□□□□ 0.04
SKA3-204ENST00000462482 IQCDQ96DY2 449 aa15.29■□□□□ 0.04
SKA3-204ENST00000462482 BTBD6Q96KE9 485 aa15.29■□□□□ 0.04
SKA3-204ENST00000462482 ZNF830Q96NB3 372 aaPredicted RBP15.29■□□□□ 0.04
SKA3-204ENST00000462482 TEFMQ96QE5 360 aaKnown RBP15.29■□□□□ 0.04
SKA3-204ENST00000462482 PKD2L2Q9NZM6 624 aa15.29■□□□□ 0.04
SKA3-204ENST00000462482 VPS18Q9P253 973 aa15.29■□□□□ 0.04
SKA3-204ENST00000462482 RPL26L1Q9UNX3 145 aaKnown RBP15.29■□□□□ 0.04
SKA3-204ENST00000462482 CHKBQ9Y259 395 aa15.29■□□□□ 0.04
SKA3-204ENST00000462482 PLEKHM1Q9Y4G2 1056 aa15.29■□□□□ 0.04
SKA3-204ENST00000462482 RP1P56715 2156 aa15.29■□□□□ 0.04
SKA3-204ENST00000462482 A0A1W2PQJ5 194 aa15.28■□□□□ 0.04
SKA3-204ENST00000462482 B4E171 279 aa15.28■□□□□ 0.04
SKA3-204ENST00000462482 CAPN5O15484 640 aaPredicted RBP15.28■□□□□ 0.04
SKA3-204ENST00000462482 MFSD11O43934 449 aa15.28■□□□□ 0.04
SKA3-204ENST00000462482 MAP3K6O95382 1288 aa15.28■□□□□ 0.04
SKA3-204ENST00000462482 CYP1A2P05177 515 aa15.28■□□□□ 0.04
SKA3-204ENST00000462482 CCNCP24863 283 aa15.28■□□□□ 0.04
SKA3-204ENST00000462482 TSPAN7P41732 249 aa15.28■□□□□ 0.04
SKA3-204ENST00000462482 FASLGP48023 281 aa15.28■□□□□ 0.04
SKA3-204ENST00000462482 CYP4F2P78329 520 aa15.28■□□□□ 0.04
SKA3-204ENST00000462482 DSC2Q02487 901 aa15.28■□□□□ 0.04
SKA3-204ENST00000462482 HHEXQ03014 270 aa15.28■□□□□ 0.04
SKA3-204ENST00000462482 MMRN1Q13201 1228 aa15.28■□□□□ 0.04
SKA3-204ENST00000462482 NR1I3Q14994 352 aa15.28■□□□□ 0.04
SKA3-204ENST00000462482 PAFAH1B3Q15102 231 aaKnown RBP15.28■□□□□ 0.04
SKA3-204ENST00000462482 PDK2Q15119 407 aa15.28■□□□□ 0.04
SKA3-204ENST00000462482 SNAP47Q5SQN1 464 aa15.28■□□□□ 0.04
SKA3-204ENST00000462482 BORAQ6PGQ7 559 aa15.28■□□□□ 0.04
SKA3-204ENST00000462482 RFLNAQ6ZTI6 216 aa15.28■□□□□ 0.04
SKA3-204ENST00000462482 CHST15Q7LFX5 561 aaPredicted RBP15.28■□□□□ 0.04
SKA3-204ENST00000462482 SFRP1Q8N474 314 aa15.28■□□□□ 0.04
SKA3-204ENST00000462482 AVL9Q8NBF6 648 aa15.28■□□□□ 0.04
SKA3-204ENST00000462482 CCNYQ8ND76 341 aa15.28■□□□□ 0.04
SKA3-204ENST00000462482 LPCAT1Q8NF37 534 aa15.28■□□□□ 0.04
SKA3-204ENST00000462482 SLC37A2Q8TED4 501 aa15.28■□□□□ 0.04
SKA3-204ENST00000462482 EFHD1Q9BUP0 239 aa15.28■□□□□ 0.04
SKA3-204ENST00000462482 TDRD1Q9BXT4 1180 aaKnown RBP15.28■□□□□ 0.04
SKA3-204ENST00000462482 LDHAL6BQ9BYZ2 381 aaPredicted RBP15.28■□□□□ 0.04
SKA3-204ENST00000462482 PCDH9Q9HC56 1237 aa15.28■□□□□ 0.04
SKA3-204ENST00000462482 TMEM63CQ9P1W3 806 aa15.28■□□□□ 0.04
SKA3-204ENST00000462482 IL17BQ9UHF5 180 aa15.28■□□□□ 0.04
SKA3-204ENST00000462482 LCMT1Q9UIC8 334 aa15.28■□□□□ 0.04
SKA3-204ENST00000462482 A0A0U1RQS6 177 aa15.27■□□□□ 0.04
SKA3-204ENST00000462482 C1orf232A0A0U1RR37 186 aa15.27■□□□□ 0.04
SKA3-204ENST00000462482 RAD1O60671 282 aa15.27■□□□□ 0.04
SKA3-204ENST00000462482 CLDN7O95471 211 aa15.27■□□□□ 0.04
SKA3-204ENST00000462482 SOD1P00441 154 aa15.27■□□□□ 0.04
SKA3-204ENST00000462482 UGT1A3P35503 534 aa15.27■□□□□ 0.04
SKA3-204ENST00000462482 ZBED6P86452 979 aa15.27■□□□□ 0.04
SKA3-204ENST00000462482 ANKRD20A8PQ5CZ79 823 aa15.27■□□□□ 0.04
SKA3-204ENST00000462482 ALKBH5Q6P6C2 394 aaKnown RBP15.27■□□□□ 0.04
SKA3-204ENST00000462482 SLC9B2Q86UD5 537 aa15.27■□□□□ 0.04
SKA3-204ENST00000462482 ZNF564Q8TBZ8 553 aaPredicted RBP15.27■□□□□ 0.04
SKA3-204ENST00000462482 CPLX3Q8WVH0 158 aa15.27■□□□□ 0.04
SKA3-204ENST00000462482 NCSTNQ92542 709 aa15.27■□□□□ 0.04
SKA3-204ENST00000462482 MAML1Q92585 1016 aa15.27■□□□□ 0.04
SKA3-204ENST00000462482 FATE1Q969F0 183 aa15.27■□□□□ 0.04
SKA3-204ENST00000462482 COX14Q96I36 57 aa15.27■□□□□ 0.04
SKA3-204ENST00000462482 CATSPER2Q96P56 530 aa15.27■□□□□ 0.04
SKA3-204ENST00000462482 TSGA13Q96PP4 275 aa15.27■□□□□ 0.04
SKA3-204ENST00000462482 ZNF670Q9BS34 389 aa15.27■□□□□ 0.04
SKA3-204ENST00000462482 ZPBPQ9BS86 351 aa15.27■□□□□ 0.04
SKA3-204ENST00000462482 HERPUD2Q9BSE4 406 aa15.27■□□□□ 0.04
SKA3-204ENST00000462482 ADGRE3Q9BY15 652 aa15.27■□□□□ 0.04
SKA3-204ENST00000462482 SLC25A18Q9H1K4 315 aa15.27■□□□□ 0.04
SKA3-204ENST00000462482 ADNPQ9H2P0 1102 aa15.27■□□□□ 0.04
SKA3-204ENST00000462482 FAM83DQ9H4H8 585 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms