RNA–Protein interactions for RNA: ENST00000442054.5

CDC42BPA-208, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 1 (best)

Gene CDC42BPA, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-208ENST00000442054 GREB1Q4ZG55 1949 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 A0A1B0GTW7 788 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 C4orf47A7E2U8 309 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 KCNK1O00180 336 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 SCAMP1O15126 338 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 PFDN6O15212 129 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 FFAR2O15552 330 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 TM7SF2O76062 418 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 MYL2P10916 166 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 JUPP14923 745 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 GRIA1P42261 906 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 PTPN9P43378 593 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 CXCR3P49682 368 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 PGFP49763 221 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 SIM1P81133 766 aaPredicted RBP7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 MSLNQ13421 630 aaPredicted RBP7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 MTM1Q13496 603 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 HNRNPA1L2Q32P51 320 aaKnown RBP7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 ALFQ53S48 1182 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 MPP7Q5T2T1 576 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 RAET1GQ6H3X3 334 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 CLEC14AQ86T13 490 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 C12orf40Q86WS4 652 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 SYT12Q8IV01 421 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 PYROXD2Q8N2H3 581 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 PCDH20Q8N6Y1 951 aaKnown RBP7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 DCAF4L2Q8NA75 395 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 AHCYL2Q96HN2 611 aaKnown RBP7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 NPY6RQ99463 290 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 ZNF670Q9BS34 389 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 FRMD8Q9BZ67 464 aaPredicted RBP7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 KCNH6Q9H252 994 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 TMPRSS4Q9NRS4 437 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 SCML1Q9UN30 329 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 AK5Q9Y6K8 562 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 ALPK3Q96L96 1907 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 H3BNX3 289 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 HGSO14964 777 aaPredicted RBP7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 SRPRAP08240 638 aaKnown RBP7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 C5AR1P21730 350 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 RBL1P28749 1068 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 MAPK9P45984 424 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 MAXP61244 160 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 SARNPP82979 210 aaKnown RBP7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 ARHGAP8P85298 464 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 ZBTB16Q05516 673 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 SLC34A1Q06495 639 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 FRG1Q14331 258 aaKnown RBP7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 PCLAFQ15004 111 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 SETDB1Q15047 1291 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 SF3A2Q15428 464 aaKnown RBP7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 DUOXA1Q1HG43 343 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 PARP15Q460N3 678 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 IRGCQ6NXR0 463 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 USP45Q70EL2 814 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 CCDC185Q8N715 623 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 IPMKQ8NFU5 416 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 IGSF8Q969P0 613 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 QKIQ96PU8 341 aaKnown RBP eCLIP7.38□□□□□ -1.237e-32■■■■■ 79
CDC42BPA-208ENST00000442054 EBF4Q9BQW3 602 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 ADGRE3Q9BY15 652 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 SLC7A8Q9UHI5 535 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 MFHAS1Q9Y4C4 1052 aa7.38□□□□□ -1.23
CDC42BPA-208ENST00000442054 SPTA1P02549 2419 aa7.37□□□□□ -1.23
CDC42BPA-208ENST00000442054 ITM2AO43736 263 aa7.37□□□□□ -1.23
CDC42BPA-208ENST00000442054 CER1O95813 267 aa7.37□□□□□ -1.23
CDC42BPA-208ENST00000442054 ANXA6P08133 673 aa7.37□□□□□ -1.23
CDC42BPA-208ENST00000442054 NDUFV2P19404 249 aa7.37□□□□□ -1.23
CDC42BPA-208ENST00000442054 FCARP24071 287 aa7.37□□□□□ -1.23
CDC42BPA-208ENST00000442054 GPR1P46091 355 aa7.37□□□□□ -1.23
CDC42BPA-208ENST00000442054 WASHC5Q12768 1159 aa7.37□□□□□ -1.23
CDC42BPA-208ENST00000442054 FOXC1Q12948 553 aa7.37□□□□□ -1.23
CDC42BPA-208ENST00000442054 GRM3Q14832 879 aa7.37□□□□□ -1.23
CDC42BPA-208ENST00000442054 RAB41Q5JT25 222 aa7.37□□□□□ -1.23
CDC42BPA-208ENST00000442054 HHATQ5VTY9 493 aa7.37□□□□□ -1.23
CDC42BPA-208ENST00000442054 SNX30Q5VWJ9 437 aa7.37□□□□□ -1.23
CDC42BPA-208ENST00000442054 NCBP2-AS2Q69YL0 99 aa7.37□□□□□ -1.23
CDC42BPA-208ENST00000442054 KIAA1211LQ6NV74 962 aa7.37□□□□□ -1.23
CDC42BPA-208ENST00000442054 C22orf39Q6P5X5 142 aa7.37□□□□□ -1.23
CDC42BPA-208ENST00000442054 NCEH1Q6PIU2 408 aa7.37□□□□□ -1.23
CDC42BPA-208ENST00000442054 TAS2R42Q7RTR8 314 aa7.37□□□□□ -1.23
CDC42BPA-208ENST00000442054 NET1Q7Z628 596 aaPredicted RBP7.37□□□□□ -1.23
CDC42BPA-208ENST00000442054 GABPB2Q8TAK5 448 aaPredicted RBP7.37□□□□□ -1.23
CDC42BPA-208ENST00000442054 PKMYT1Q99640 499 aa7.37□□□□□ -1.23
CDC42BPA-208ENST00000442054 EBNA1BP2Q99848 306 aaKnown RBP7.37□□□□□ -1.23
CDC42BPA-208ENST00000442054 TRIM55Q9BYV6 548 aa7.37□□□□□ -1.23
CDC42BPA-208ENST00000442054 POLR1EQ9GZS1 481 aaKnown RBP7.37□□□□□ -1.23
CDC42BPA-208ENST00000442054 CCDC68Q9H2F9 335 aa7.37□□□□□ -1.23
CDC42BPA-208ENST00000442054 DPEP2Q9H4A9 486 aa7.37□□□□□ -1.23
CDC42BPA-208ENST00000442054 ZNF212Q9UDV6 495 aa7.37□□□□□ -1.23
CDC42BPA-208ENST00000442054 DCTN4Q9UJW0 460 aa7.37□□□□□ -1.23
CDC42BPA-208ENST00000442054 SEC23IPQ9Y6Y8 1000 aaKnown RBP7.37□□□□□ -1.23
CDC42BPA-208ENST00000442054 FRMPD3Q5JV73 1810 aa7.37□□□□□ -1.23
CDC42BPA-208ENST00000442054 A0A0D9SEW6 157 aa7.37□□□□□ -1.23
CDC42BPA-208ENST00000442054 A0A1W2PQU0 124 aa7.37□□□□□ -1.23
CDC42BPA-208ENST00000442054 HHLA1C9JL84 531 aa7.37□□□□□ -1.23
CDC42BPA-208ENST00000442054 I6L893 689 aaPredicted RBP7.37□□□□□ -1.23
CDC42BPA-208ENST00000442054 STX7O15400 261 aaKnown RBP7.37□□□□□ -1.23
CDC42BPA-208ENST00000442054 CCNT2O60583 730 aaKnown RBP7.37□□□□□ -1.23
CDC42BPA-208ENST00000442054 SNX2O60749 519 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms