RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 LCNL1Q6ZST4 164 aa4.21□□□□□ -1.74
HMGB3-203ENST00000430118 ZSCAN30Q86W11 494 aa4.21□□□□□ -1.74
HMGB3-203ENST00000430118 DNAAF5Q86Y56 855 aa4.21□□□□□ -1.74
HMGB3-203ENST00000430118 RHPN2Q8IUC4 686 aa4.21□□□□□ -1.74
HMGB3-203ENST00000430118 SCYL3Q8IZE3 742 aa4.21□□□□□ -1.74
HMGB3-203ENST00000430118 SYT2Q8N9I0 419 aaPredicted RBP4.21□□□□□ -1.74
HMGB3-203ENST00000430118 AVL9Q8NBF6 648 aa4.21□□□□□ -1.74
HMGB3-203ENST00000430118 KCTD6Q8NC69 237 aa4.21□□□□□ -1.74
HMGB3-203ENST00000430118 CXorf38Q8TB03 319 aa4.21□□□□□ -1.74
HMGB3-203ENST00000430118 BCAS4Q8TDM0 211 aa4.21□□□□□ -1.74
HMGB3-203ENST00000430118 FAR1Q8WVX9 515 aa4.21□□□□□ -1.74
HMGB3-203ENST00000430118 MMABQ96EY8 250 aaPredicted RBP4.21□□□□□ -1.74
HMGB3-203ENST00000430118 PLEKHG4BQ96PX9 1271 aa4.21□□□□□ -1.74
HMGB3-203ENST00000430118 BDH2Q9BUT1 245 aa4.21□□□□□ -1.74
HMGB3-203ENST00000430118 MTIF3Q9H2K0 278 aaKnown RBP4.21□□□□□ -1.74
HMGB3-203ENST00000430118 PLEKHA4Q9H4M7 779 aa4.21□□□□□ -1.74
HMGB3-203ENST00000430118 CCDC177Q9NQR7 707 aaPredicted RBP4.21□□□□□ -1.74
HMGB3-203ENST00000430118 ABI3Q9P2A4 366 aa4.21□□□□□ -1.74
HMGB3-203ENST00000430118 MKLN1Q9UL63 735 aa4.21□□□□□ -1.74
HMGB3-203ENST00000430118 BTBD3Q9Y2F9 522 aa4.21□□□□□ -1.74
HMGB3-203ENST00000430118 HSFX4A0A1B0GTS1 333 aaPredicted RBP4.2□□□□□ -1.74
HMGB3-203ENST00000430118 HSFX3A0A1B0GWH4 333 aaPredicted RBP4.2□□□□□ -1.74
HMGB3-203ENST00000430118 A8MXE2 369 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 EXOC3O60645 756 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 DAB1O75553 588 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 SLC25A12O75746 678 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 IL1AP01583 271 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 TFP02787 698 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 CCDC172P0C7W6 258 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 ACTN1P12814 892 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 SLC2A4P14672 509 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 GABRB1P18505 474 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 TNFRSF1AP19438 455 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 WT1P19544 449 aaPredicted RBP4.2□□□□□ -1.74
HMGB3-203ENST00000430118 TACR3P29371 465 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 PPP2R1AP30153 589 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 IDUAP35475 653 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 MPLP40238 635 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 SLC15A1P46059 708 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 GNAQP50148 359 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 CYP2J2P51589 502 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 EFNA5P52803 228 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 ARSFP54793 590 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 HDAC4P56524 1084 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 CCDC173Q0VFZ6 552 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 SLC14A1Q13336 389 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 FRG1Q14331 258 aaKnown RBP4.2□□□□□ -1.74
HMGB3-203ENST00000430118 PCLAFQ15004 111 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 SHHQ15465 462 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 CAVIN4Q5BKX8 364 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 GKAP1Q5VSY0 366 aaPredicted RBP4.2□□□□□ -1.74
HMGB3-203ENST00000430118 MFSD14CQ5VZR4 134 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 ISM2Q6H9L7 571 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 CPLX2Q6PUV4 134 aaKnown RBP4.2□□□□□ -1.74
HMGB3-203ENST00000430118 TSSK4Q6SA08 328 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 DHRS13Q6UX07 377 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 WDR5BQ86VZ2 330 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 TMC8Q8IU68 726 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 SCML4Q8N228 414 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 POGLUT1Q8NBL1 392 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 MNS1Q8NEH6 495 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 GSDMBQ8TAX9 411 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 FAM151AQ8WW52 585 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 SLC22A18Q96BI1 424 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 ARHGEF26Q96DR7 871 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 FAM210AQ96ND0 272 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 PDZD7Q9H5P4 517 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 POLR1BQ9H9Y6 1135 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.2□□□□□ -1.74
HMGB3-203ENST00000430118 SMPD4Q9NXE4 827 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 PSD3Q9NYI0 1048 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 TAB2Q9NYJ8 693 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 FOXJ2Q9P0K8 574 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 CPSF2Q9P2I0 782 aaKnown RBP4.2□□□□□ -1.74
HMGB3-203ENST00000430118 SEC63Q9UGP8 760 aaKnown RBP4.2□□□□□ -1.74
HMGB3-203ENST00000430118 ZNF112Q9UJU3 913 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 CARD8Q9Y2G2 431 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 CCL27Q9Y4X3 112 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 PCDHAC2Q9Y5I4 1007 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 ZHX2Q9Y6X8 837 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 LTBP2Q14767 1821 aa4.2□□□□□ -1.74
HMGB3-203ENST00000430118 LAMA2P24043 3122 aaKnown RBP4.2□□□□□ -1.74
HMGB3-203ENST00000430118 KAT6AQ92794 2004 aa4.19□□□□□ -1.74
HMGB3-203ENST00000430118 UQCRHLA0A096LP55 91 aa4.19□□□□□ -1.74
HMGB3-203ENST00000430118 CBX6O95503 412 aa4.19□□□□□ -1.74
HMGB3-203ENST00000430118 HSPA4LO95757 839 aa4.19□□□□□ -1.74
HMGB3-203ENST00000430118 MT-CYBP00156 380 aaPredicted RBP4.19□□□□□ -1.74
HMGB3-203ENST00000430118 UQCRHP07919 91 aa4.19□□□□□ -1.74
HMGB3-203ENST00000430118 NEFHP12036 1026 aa4.19□□□□□ -1.74
HMGB3-203ENST00000430118 TFEBP19484 476 aa4.19□□□□□ -1.74
HMGB3-203ENST00000430118 CYP2B6P20813 491 aa4.19□□□□□ -1.74
HMGB3-203ENST00000430118 MSH2P43246 934 aa4.19□□□□□ -1.74
HMGB3-203ENST00000430118 PTPN9P43378 593 aa4.19□□□□□ -1.74
HMGB3-203ENST00000430118 NRIP1P48552 1158 aa4.19□□□□□ -1.74
HMGB3-203ENST00000430118 SLC12A2P55011 1212 aa4.19□□□□□ -1.74
HMGB3-203ENST00000430118 RRP1P56182 461 aaKnown RBP4.19□□□□□ -1.74
HMGB3-203ENST00000430118 TFCP2Q12800 502 aa4.19□□□□□ -1.74
HMGB3-203ENST00000430118 MTA1Q13330 715 aa4.19□□□□□ -1.74
HMGB3-203ENST00000430118 VEPH1Q14D04 833 aa4.19□□□□□ -1.74
HMGB3-203ENST00000430118 CCDC57Q2TAC2 916 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms