RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 FGD2Q7Z6J4 655 aa12.89□□□□□ -0.35
PTCH1-207ENST00000429896 STAG3L4Q8TBR4 150 aa12.89□□□□□ -0.35
PTCH1-207ENST00000429896 ASZ1Q8WWH4 475 aa12.89□□□□□ -0.35
PTCH1-207ENST00000429896 IGSF8Q969P0 613 aa12.89□□□□□ -0.35
PTCH1-207ENST00000429896 PHF21BQ96EK2 531 aa12.89□□□□□ -0.35
PTCH1-207ENST00000429896 FEM1AQ9BSK4 669 aa12.89□□□□□ -0.35
PTCH1-207ENST00000429896 AHSPQ9NZD4 102 aa12.89□□□□□ -0.35
PTCH1-207ENST00000429896 PPIEQ9UNP9 301 aaKnown RBP12.89□□□□□ -0.35
PTCH1-207ENST00000429896 ASF1AQ9Y294 204 aa12.89□□□□□ -0.35
PTCH1-207ENST00000429896 WNT9AO14904 365 aa12.89□□□□□ -0.35
PTCH1-207ENST00000429896 SRPRAP08240 638 aaKnown RBP12.89□□□□□ -0.35
PTCH1-207ENST00000429896 FAM153BP0C7A2 387 aa12.89□□□□□ -0.35
PTCH1-207ENST00000429896 VIPR1P32241 457 aa12.89□□□□□ -0.35
PTCH1-207ENST00000429896 FAM153CQ494X1 144 aa12.89□□□□□ -0.35
PTCH1-207ENST00000429896 SCML4Q8N228 414 aa12.89□□□□□ -0.35
PTCH1-207ENST00000429896 MDM1Q8TC05 714 aa12.89□□□□□ -0.35
PTCH1-207ENST00000429896 IMP3Q9NV31 184 aaKnown RBP12.89□□□□□ -0.35
PTCH1-207ENST00000429896 A0A0D9SEW6 157 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 KRT6AP02538 564 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 KRT6BP04259 564 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 ABCB1P08183 1280 aaPredicted RBP12.88□□□□□ -0.35
PTCH1-207ENST00000429896 GRIA4P48058 902 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 KRT6CP48668 564 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 GALNT2Q10471 571 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 SLC9A4Q6AI14 798 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 TMEM173Q86WV6 379 aaPredicted RBP12.88□□□□□ -0.35
PTCH1-207ENST00000429896 VPS37AQ8NEZ2 397 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 SHKBP1Q8TBC3 707 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 OPTCQ9UBM4 332 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 FAM237BA0A1B0GVD1 139 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 KATNA1O75449 491 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 SCD5Q86SK9 330 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 OR56A4Q8NGH8 313 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 TCEAL4Q96EI5 215 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 WDR41Q9HAD4 459 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 ZNF334Q9HCZ1 680 aaPredicted RBP12.88□□□□□ -0.35
PTCH1-207ENST00000429896 SNX8Q9Y5X2 465 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 GSAPA4D1B5 854 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 UPK3BL1B0FP48 263 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 UPK3BL2E5RIL1 263 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 PITX1P78337 314 aaPredicted RBP12.88□□□□□ -0.35
PTCH1-207ENST00000429896 PAGE2BQ5JRK9 111 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 FNBP1LQ5T0N5 605 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 KLC4Q9NSK0 619 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 POLR3BQ9NW08 1133 aaPredicted RBP12.88□□□□□ -0.35
PTCH1-207ENST00000429896 TNPO3Q9Y5L0 923 aaKnown RBP12.88□□□□□ -0.35
PTCH1-207ENST00000429896 KRT8P05787 483 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 IRS1P35568 1242 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 NKX3-2P78367 333 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 ALKBH2Q6NS38 261 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 TRIM69Q86WT6 500 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 GPR65Q8IYL9 337 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 CPT1BQ92523 772 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 APOPT1Q96IL0 206 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 TUBGCP5Q96RT8 1024 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 CSNK1G1Q9HCP0 422 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 MRGBPQ9NV56 204 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 LDLRAP1Q5SW96 308 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 TSTD2Q5T7W7 516 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 ARMCX6Q7L4S7 300 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 MYLIPQ8WY64 445 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 THUMPD3Q9BV44 507 aaKnown RBP12.88□□□□□ -0.35
PTCH1-207ENST00000429896 WDR26Q9H7D7 661 aa12.88□□□□□ -0.35
PTCH1-207ENST00000429896 PRMT5O14744 637 aaPredicted RBP12.87□□□□□ -0.35
PTCH1-207ENST00000429896 PRKCGP05129 697 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 POU1F1P28069 291 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 KCNK10P57789 538 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 DUSP6Q16828 381 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 CNSTQ6PJW8 725 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 THAP11Q96EK4 314 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 CHRAC1Q9NRG0 131 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 TSC22D2O75157 780 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 VIPP01282 170 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 SKP1P63208 163 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 FBXO43Q4G163 708 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 ANKS6Q68DC2 871 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 HID1Q8IV36 788 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 OR10G6Q8NH81 332 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 IL12RB2Q99665 862 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 ALG9Q9H6U8 611 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 RXFP1Q9HBX9 757 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 ALOX15BO15296 676 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 ABHD2P08910 425 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 CCDC166P0CW27 439 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 GPC1P35052 558 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 RAB10P61026 200 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 TUBGCP3Q96CW5 907 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 KLF16Q9BXK1 252 aaPredicted RBP12.87□□□□□ -0.35
PTCH1-207ENST00000429896 ARL2BPQ9Y2Y0 163 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 ZNF487B1APH4 448 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 GSRP00390 522 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 CLCN4P51793 760 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 GDF10P55107 478 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 ZNF33AQ06730 810 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 PWWP2AQ96N64 755 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 SLC46A2Q9BY10 475 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 FKBPLQ9UIM3 349 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 MCM8Q9UJA3 840 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 TTC24A2A3L6 582 aaPredicted RBP12.87□□□□□ -0.35
PTCH1-207ENST00000429896 LILRB3O75022 631 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms