RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 UBXN11Q5T124 520 aa10.63□□□□□ -0.71
TCOF1-204ENST00000427724 ESRP1Q6NXG1 681 aaKnown RBP10.63□□□□□ -0.71
TCOF1-204ENST00000427724 TAS1R3Q7RTX0 852 aa10.63□□□□□ -0.71
TCOF1-204ENST00000427724 MRPL10Q7Z7H8 261 aaKnown RBP10.63□□□□□ -0.71
TCOF1-204ENST00000427724 FAM129CQ86XR2 697 aa10.63□□□□□ -0.71
TCOF1-204ENST00000427724 SLC44A2Q8IWA5 706 aaPredicted RBP10.63□□□□□ -0.71
TCOF1-204ENST00000427724 CATSPER1Q8NEC5 780 aa10.63□□□□□ -0.71
TCOF1-204ENST00000427724 C10orf82Q8WW14 230 aa10.63□□□□□ -0.71
TCOF1-204ENST00000427724 SLC44A1Q8WWI5 657 aa10.63□□□□□ -0.71
TCOF1-204ENST00000427724 OTUB2Q96DC9 234 aa10.63□□□□□ -0.71
TCOF1-204ENST00000427724 HHIPQ96QV1 700 aa10.63□□□□□ -0.71
TCOF1-204ENST00000427724 NR1H4Q96RI1 486 aaPredicted RBP10.63□□□□□ -0.71
TCOF1-204ENST00000427724 UHRF1Q96T88 793 aaPredicted RBP10.63□□□□□ -0.71
TCOF1-204ENST00000427724 EXO5Q9H790 373 aa10.63□□□□□ -0.71
TCOF1-204ENST00000427724 TRIM45Q9H8W5 580 aaPredicted RBP10.63□□□□□ -0.71
TCOF1-204ENST00000427724 SUSD2Q9UGT4 822 aa10.63□□□□□ -0.71
TCOF1-204ENST00000427724 SCML2Q9UQR0 700 aa10.63□□□□□ -0.71
TCOF1-204ENST00000427724 CDYLQ9Y232 598 aa10.63□□□□□ -0.71
TCOF1-204ENST00000427724 SIT1Q9Y3P8 196 aa10.63□□□□□ -0.71
TCOF1-204ENST00000427724 PCDHB11Q9Y5F2 797 aa10.63□□□□□ -0.71
TCOF1-204ENST00000427724 TBX10O75333 385 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 TCEA3O75764 348 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 CEBPBP17676 345 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 GPD2P43304 727 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 RPIAP49247 311 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 OGDHQ02218 1023 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 PRKG2Q13237 762 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 GRIN2CQ14957 1233 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 LPCAT4Q643R3 524 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 C16orf89Q6UX73 402 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 RRM2BQ7LG56 351 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 TDRPQ86YL5 185 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 PSTKQ8IV42 348 aaKnown RBP10.62□□□□□ -0.71
TCOF1-204ENST00000427724 PRSS58Q8IYP2 241 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 CSPG4P5Q96PW8 444 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 PHACTR1Q9C0D0 580 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 WDR6Q9NNW5 1121 aaKnown RBP10.62□□□□□ -0.71
TCOF1-204ENST00000427724 GDE1Q9NZC3 331 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 IGSF9Q9P2J2 1179 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 TLR6Q9Y2C9 796 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 AHCTF1Q8WYP5 2266 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 A0A0A0MRY4 1105 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 L1CAMP32004 1257 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 GP5P40197 560 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 NEK3P51956 506 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 TNK2Q07912 1038 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 CARD16Q5EG05 197 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 SH3PXD2AQ5TCZ1 1133 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 PATL1Q86TB9 770 aaKnown RBP10.62□□□□□ -0.71
TCOF1-204ENST00000427724 TMEM130Q8N3G9 435 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 SPATA13Q96N96 652 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 ZNF670Q9BS34 389 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 SYT11Q9BT88 431 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 CATSPERZQ9NTU4 200 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 GPN3Q9UHW5 284 aaPredicted RBP10.62□□□□□ -0.71
TCOF1-204ENST00000427724 ACOT9Q9Y305 439 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 CITO14578 2027 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 A0A096LPK6 155 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 PHGDHO43175 533 aaKnown RBP10.62□□□□□ -0.71
TCOF1-204ENST00000427724 ADAM12O43184 909 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 IL1R2P27930 398 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 GRIA2P42262 883 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 EML3Q32P44 896 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 RHBDF2Q6PJF5 856 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 RINLQ6ZS11 566 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 TCEAL8Q8IYN2 117 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 RBM15BQ8NDT2 890 aaKnown RBP10.62□□□□□ -0.71
TCOF1-204ENST00000427724 NRBF2Q96F24 287 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 MAGED4Q96JG8 741 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 ING2Q9H160 280 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 ELOVL6Q9H5J4 265 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 STX18Q9P2W9 335 aaKnown RBP10.62□□□□□ -0.71
TCOF1-204ENST00000427724 NAV1Q8NEY1 1877 aa10.62□□□□□ -0.71
TCOF1-204ENST00000427724 A0A1W2PP55 124 aa10.61□□□□□ -0.71
TCOF1-204ENST00000427724 ZNF840PA6NDX5 716 aa10.61□□□□□ -0.71
TCOF1-204ENST00000427724 KATNA1O75449 491 aa10.61□□□□□ -0.71
TCOF1-204ENST00000427724 CYP7B1O75881 506 aa10.61□□□□□ -0.71
TCOF1-204ENST00000427724 CNTFP26441 200 aa10.61□□□□□ -0.71
TCOF1-204ENST00000427724 KRT20P35900 424 aa10.61□□□□□ -0.71
TCOF1-204ENST00000427724 CHN2P52757 468 aa10.61□□□□□ -0.71
TCOF1-204ENST00000427724 NOMO1Q15155 1222 aa10.61□□□□□ -0.71
TCOF1-204ENST00000427724 PUS10Q3MIT2 529 aaKnown RBP10.61□□□□□ -0.71
TCOF1-204ENST00000427724 FBXO43Q4G163 708 aa10.61□□□□□ -0.71
TCOF1-204ENST00000427724 MSS51Q4VC12 460 aa10.61□□□□□ -0.71
TCOF1-204ENST00000427724 ULK2Q8IYT8 1036 aa10.61□□□□□ -0.71
TCOF1-204ENST00000427724 CAMKK1Q8N5S9 505 aa10.61□□□□□ -0.71
TCOF1-204ENST00000427724 GSTCDQ8NEC7 633 aa10.61□□□□□ -0.71
TCOF1-204ENST00000427724 OR4K2Q8NGD2 314 aa10.61□□□□□ -0.71
TCOF1-204ENST00000427724 ITFG1Q8TB96 612 aa10.61□□□□□ -0.71
TCOF1-204ENST00000427724 LMX1AQ8TE12 382 aa10.61□□□□□ -0.71
TCOF1-204ENST00000427724 P2RY11Q96G91 374 aa10.61□□□□□ -0.71
TCOF1-204ENST00000427724 CLSTN3Q9BQT9 956 aa10.61□□□□□ -0.71
TCOF1-204ENST00000427724 TCF7L2Q9NQB0 619 aa10.61□□□□□ -0.71
TCOF1-204ENST00000427724 ZNF229Q9UJW7 825 aa10.61□□□□□ -0.71
TCOF1-204ENST00000427724 EDDM13A0A1B0GTR0 161 aa10.61□□□□□ -0.71
TCOF1-204ENST00000427724 A8MU76 341 aa10.61□□□□□ -0.71
TCOF1-204ENST00000427724 TPST1O60507 370 aa10.61□□□□□ -0.71
TCOF1-204ENST00000427724 CLASP2O75122 1294 aaKnown RBP10.61□□□□□ -0.71
TCOF1-204ENST00000427724 MAPKAPK2P49137 400 aa10.61□□□□□ -0.71
TCOF1-204ENST00000427724 PLK1P53350 603 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms