RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 TTC33Q6PID6 262 aaPredicted RBP9.77□□□□□ -0.85
CD44-206ENST00000415148 BLOC1S3Q6QNY0 202 aa9.77□□□□□ -0.85
CD44-206ENST00000415148 SCD5Q86SK9 330 aa9.77□□□□□ -0.85
CD44-206ENST00000415148 C14orf80Q86SX3 495 aa9.77□□□□□ -0.85
CD44-206ENST00000415148 LDB1Q86U70 411 aaPredicted RBP9.77□□□□□ -0.85
CD44-206ENST00000415148 PAPD5Q8NDF8 572 aaKnown RBP9.77□□□□□ -0.85
CD44-206ENST00000415148 ZNF420Q8TAQ5 688 aaPredicted RBP9.77□□□□□ -0.85
CD44-206ENST00000415148 GIPC3Q8TF64 312 aa9.77□□□□□ -0.85
CD44-206ENST00000415148 TWIST2Q8WVJ9 160 aa9.77□□□□□ -0.85
CD44-206ENST00000415148 PTERQ96BW5 349 aa9.77□□□□□ -0.85
CD44-206ENST00000415148 LRRC58Q96CX6 371 aa9.77□□□□□ -0.85
CD44-206ENST00000415148 UROC1Q96N76 676 aa9.77□□□□□ -0.85
CD44-206ENST00000415148 ARMC7Q9H6L4 198 aa9.77□□□□□ -0.85
CD44-206ENST00000415148 RPF2Q9H7B2 306 aaKnown RBP9.77□□□□□ -0.85
CD44-206ENST00000415148 PRDM5Q9NQX1 630 aaPredicted RBP9.77□□□□□ -0.85
CD44-206ENST00000415148 POLR3BQ9NW08 1133 aaPredicted RBP9.77□□□□□ -0.85
CD44-206ENST00000415148 TMEM248Q9NWD8 314 aa9.77□□□□□ -0.85
CD44-206ENST00000415148 USP22Q9UPT9 525 aa9.77□□□□□ -0.85
CD44-206ENST00000415148 PCDHA9Q9Y5H5 950 aa9.77□□□□□ -0.85
CD44-206ENST00000415148 CASTOR2A6NHX0 329 aa9.76□□□□□ -0.85
CD44-206ENST00000415148 H3BMQ9 156 aa9.76□□□□□ -0.85
CD44-206ENST00000415148 NR5A2O00482 541 aa9.76□□□□□ -0.85
CD44-206ENST00000415148 B4GAT1O43505 415 aa9.76□□□□□ -0.85
CD44-206ENST00000415148 LDB2O43679 373 aa9.76□□□□□ -0.85
CD44-206ENST00000415148 ZNF623O75123 536 aa9.76□□□□□ -0.85
CD44-206ENST00000415148 RASAL1O95294 804 aa9.76□□□□□ -0.85
CD44-206ENST00000415148 NPPAP01160 153 aa9.76□□□□□ -0.85
CD44-206ENST00000415148 EPOP01588 193 aa9.76□□□□□ -0.85
CD44-206ENST00000415148 OGNP20774 298 aaKnown RBP9.76□□□□□ -0.85
CD44-206ENST00000415148 CCT8P50990 548 aa9.76□□□□□ -0.85
CD44-206ENST00000415148 TSPY1Q01534 308 aa9.76□□□□□ -0.85
CD44-206ENST00000415148 ITKQ08881 620 aa9.76□□□□□ -0.85
CD44-206ENST00000415148 CBX3Q13185 183 aa9.76□□□□□ -0.85
CD44-206ENST00000415148 FSCN1Q16658 493 aaKnown RBP9.76□□□□□ -0.85
CD44-206ENST00000415148 AARS2Q5JTZ9 985 aaKnown RBP9.76□□□□□ -0.85
CD44-206ENST00000415148 SIRPB2Q5JXA9 342 aa9.76□□□□□ -0.85
CD44-206ENST00000415148 MSANTD2Q6P1R3 559 aa9.76□□□□□ -0.85
CD44-206ENST00000415148 EFL1Q7Z2Z2 1120 aaKnown RBP9.76□□□□□ -0.85
CD44-206ENST00000415148 LRRTM3Q86VH5 581 aa9.76□□□□□ -0.85
CD44-206ENST00000415148 PTRH1Q86Y79 214 aaKnown RBP9.76□□□□□ -0.85
CD44-206ENST00000415148 CMTR2Q8IYT2 770 aaKnown RBP9.76□□□□□ -0.85
CD44-206ENST00000415148 ZNF683Q8IZ20 524 aa9.76□□□□□ -0.85
CD44-206ENST00000415148 PTGR2Q8N8N7 351 aaPredicted RBP9.76□□□□□ -0.85
CD44-206ENST00000415148 SLC39A13Q96H72 371 aa9.76□□□□□ -0.85
CD44-206ENST00000415148 COG8Q96MW5 612 aa9.76□□□□□ -0.85
CD44-206ENST00000415148 ADI1Q9BV57 179 aa9.76□□□□□ -0.85
CD44-206ENST00000415148 ZYG11BQ9C0D3 744 aa9.76□□□□□ -0.85
CD44-206ENST00000415148 PLGRKTQ9HBL7 147 aa9.76□□□□□ -0.85
CD44-206ENST00000415148 MID1IP1Q9NPA3 183 aa9.76□□□□□ -0.85
CD44-206ENST00000415148 SLC52A3Q9NQ40 469 aa9.76□□□□□ -0.85
CD44-206ENST00000415148 MPP6Q9NZW5 540 aa9.76□□□□□ -0.85
CD44-206ENST00000415148 ZNHIT2Q9UHR6 403 aa9.76□□□□□ -0.85
CD44-206ENST00000415148 CDH7Q9ULB5 785 aa9.76□□□□□ -0.85
CD44-206ENST00000415148 MIA3Q5JRA6 1907 aa9.76□□□□□ -0.85
CD44-206ENST00000415148 A0A1B0GTL3 188 aa9.75□□□□□ -0.85
CD44-206ENST00000415148 J3QRK9 145 aa9.75□□□□□ -0.85
CD44-206ENST00000415148 PIP5K1BO14986 540 aa9.75□□□□□ -0.85
CD44-206ENST00000415148 GPR182O15218 404 aa9.75□□□□□ -0.85
CD44-206ENST00000415148 ACOX3O15254 700 aa9.75□□□□□ -0.85
CD44-206ENST00000415148 CLASP2O75122 1294 aaKnown RBP9.75□□□□□ -0.85
CD44-206ENST00000415148 RPLP2P05387 115 aaKnown RBP9.75□□□□□ -0.85
CD44-206ENST00000415148 MTHFD1P11586 935 aaKnown RBP9.75□□□□□ -0.85
CD44-206ENST00000415148 TYMPP19971 482 aa9.75□□□□□ -0.85
CD44-206ENST00000415148 CES1P23141 567 aa9.75□□□□□ -0.85
CD44-206ENST00000415148 SLC6A2P23975 617 aa9.75□□□□□ -0.85
CD44-206ENST00000415148 CDH13P55290 713 aa9.75□□□□□ -0.85
CD44-206ENST00000415148 FOXA1P55317 472 aa9.75□□□□□ -0.85
CD44-206ENST00000415148 RAB15P59190 212 aa9.75□□□□□ -0.85
CD44-206ENST00000415148 CD300CQ08708 224 aa9.75□□□□□ -0.85
CD44-206ENST00000415148 SLC10A7Q0GE19 358 aa9.75□□□□□ -0.85
CD44-206ENST00000415148 BNIP3Q12983 259 aa9.75□□□□□ -0.85
CD44-206ENST00000415148 VPS26BQ4G0F5 336 aa9.75□□□□□ -0.85
CD44-206ENST00000415148 AASDHQ4L235 1098 aaPredicted RBP9.75□□□□□ -0.85
CD44-206ENST00000415148 MORN1Q5T089 497 aa9.75□□□□□ -0.85
CD44-206ENST00000415148 OVOS1Q6IE37 1185 aa9.75□□□□□ -0.85
CD44-206ENST00000415148 MON1AQ86VX9 555 aa9.75□□□□□ -0.85
CD44-206ENST00000415148 SPATA2LQ8IUW3 424 aaPredicted RBP9.75□□□□□ -0.85
CD44-206ENST00000415148 DCP1BQ8IZD4 617 aaKnown RBP9.75□□□□□ -0.85
CD44-206ENST00000415148 LRRC43Q8N309 656 aa9.75□□□□□ -0.85
CD44-206ENST00000415148 ARRDC2Q8TBH0 407 aa9.75□□□□□ -0.85
CD44-206ENST00000415148 MIPOL1Q8TD10 442 aa9.75□□□□□ -0.85
CD44-206ENST00000415148 BRI3BPQ8WY22 251 aa9.75□□□□□ -0.85
CD44-206ENST00000415148 SEPT8Q92599 483 aa9.75□□□□□ -0.85
CD44-206ENST00000415148 FBXL8Q96CD0 374 aa9.75□□□□□ -0.85
CD44-206ENST00000415148 CNDP2Q96KP4 475 aaKnown RBP9.75□□□□□ -0.85
CD44-206ENST00000415148 ATOH8Q96SQ7 321 aa9.75□□□□□ -0.85
CD44-206ENST00000415148 PARK7Q99497 189 aaKnown RBP9.75□□□□□ -0.85
CD44-206ENST00000415148 PAAF1Q9BRP4 392 aa9.75□□□□□ -0.85
CD44-206ENST00000415148 PAIP1Q9H074 479 aaKnown RBP9.75□□□□□ -0.85
CD44-206ENST00000415148 AGO3Q9H9G7 860 aaKnown RBP9.75□□□□□ -0.85
CD44-206ENST00000415148 SYTL2Q9HCH5 934 aa9.75□□□□□ -0.85
CD44-206ENST00000415148 PFDN4Q9NQP4 134 aa9.75□□□□□ -0.85
CD44-206ENST00000415148 CMTM6Q9NX76 183 aa9.75□□□□□ -0.85
CD44-206ENST00000415148 BLOC1S6Q9UL45 172 aa9.75□□□□□ -0.85
CD44-206ENST00000415148 IGLV3-10A0A075B6K4 115 aa9.75□□□□□ -0.85
CD44-206ENST00000415148 A0A1W2PP18 115 aa9.75□□□□□ -0.85
CD44-206ENST00000415148 FXYD1O00168 92 aa9.75□□□□□ -0.85
CD44-206ENST00000415148 CD3EAPO15446 510 aaKnown RBP9.75□□□□□ -0.85
CD44-206ENST00000415148 MSI1O43347 362 aaKnown RBP9.75□□□□□ -0.85
CD44-206ENST00000415148 SNAP91O60641 907 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms