RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 INSL5Q9Y5Q6 135 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 CD48P09326 243 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 GSCP56915 257 aaPredicted RBP11.93□□□□□ -0.5
PTPRF-205ENST00000414879 DEFA1P59665 94 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 DEFA3P59666 94 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 TOP3AQ13472 1001 aaPredicted RBP11.93□□□□□ -0.5
PTPRF-205ENST00000414879 NCF4Q15080 339 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 ATP13A5Q4VNC0 1218 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 ERICH5Q6P6B1 374 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 TAS1R3Q7RTX0 852 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 CUZD1Q86UP6 607 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 CAMK1DQ8IU85 385 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 GALNT13Q8IUC8 556 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 ZDHHC13Q8IUH4 622 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 C10orf53Q8N6V4 93 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 DCAF4L2Q8NA75 395 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 LMO3Q8TAP4 145 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 ZNF296Q8WUU4 475 aaPredicted RBP11.93□□□□□ -0.5
PTPRF-205ENST00000414879 NDRG1Q92597 394 aaKnown RBP11.93□□□□□ -0.5
PTPRF-205ENST00000414879 FERD3LQ96RJ6 166 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 TWNKQ96RR1 684 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 RHOBTB2Q9BYZ6 727 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 ZNF446Q9NWS9 450 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 SAGE1Q9NXZ1 904 aa11.93□□□□□ -0.5
PTPRF-205ENST00000414879 CNMDO75829 334 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 PAPSS2O95340 614 aaPredicted RBP11.92□□□□□ -0.5
PTPRF-205ENST00000414879 GNPDA1P46926 289 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 ECT2LQ008S8 904 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 TRAF2Q12933 501 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 LCP2Q13094 533 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 TAF5Q15542 800 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 NDUFA9Q16795 377 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 NCBP2-AS2Q69YL0 99 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 C10orf107Q8IVU9 208 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 TSGA13Q96PP4 275 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 RTKNQ9BST9 563 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 UNKQ9C0B0 810 aaKnown RBP11.92□□□□□ -0.5
PTPRF-205ENST00000414879 TRIT1Q9H3H1 467 aaKnown RBP11.92□□□□□ -0.5
PTPRF-205ENST00000414879 TFB2MQ9H5Q4 396 aaKnown RBP11.92□□□□□ -0.5
PTPRF-205ENST00000414879 GRHL1Q9NZI5 618 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 GABRQQ9UN88 632 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 TPRKBQ9Y3C4 175 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 ATP6V1G2O95670 118 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 GTF2E2P29084 291 aaKnown RBP11.92□□□□□ -0.5
PTPRF-205ENST00000414879 ALDH6A1Q02252 535 aaKnown RBP11.92□□□□□ -0.5
PTPRF-205ENST00000414879 SLC25A11Q02978 314 aaKnown RBP11.92□□□□□ -0.5
PTPRF-205ENST00000414879 ILF3Q12906 894 aaKnown RBP eCLIP11.92□□□□□ -0.5
PTPRF-205ENST00000414879 KRR1Q13601 381 aaKnown RBP11.92□□□□□ -0.5
PTPRF-205ENST00000414879 RFX4Q33E94 735 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 LRRC23Q53EV4 343 aaPredicted RBP11.92□□□□□ -0.5
PTPRF-205ENST00000414879 FNBP1LQ5T0N5 605 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 NATD1Q8N6N6 113 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 OR6Y1Q8NGX8 325 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 DDX1Q92499 740 aaKnown RBP11.92□□□□□ -0.5
PTPRF-205ENST00000414879 SHDQ96IW2 340 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 TBATAQ96M53 351 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 PIGVQ9NUD9 493 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 HMGXB4Q9UGU5 601 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 LRCH1Q9Y2L9 728 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 TCRBV7S2A1N4TA0A589 114 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 GALTP07902 379 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 PIRTP0C851 137 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 PSME3P61289 254 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 TEAD4Q15561 434 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 FBXL22Q6P050 247 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 OSTM1Q86WC4 334 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 ULK2Q8IYT8 1036 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 PYROXD2Q8N2H3 581 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 NAT16Q8N8M0 369 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 CDYL2Q8N8U2 506 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 NAT8LQ8N9F0 302 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 SCAMP5Q8TAC9 235 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 TLCD1Q96CP7 247 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 SMOQ99835 787 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 REEP1Q9H902 201 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 PTPRHQ9HD43 1115 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 SEMA3GQ9NS98 782 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 PROCP04070 461 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 CYP11A1P05108 521 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 MTHFRP42898 656 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 XIAPP98170 497 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 ABRQ12979 859 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 TRIM60Q495X7 471 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 SYPL2Q5VXT5 272 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 DET1Q7L5Y6 550 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 MICU2Q8IYU8 434 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 PLEKHO2Q8TD55 490 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 RAD51AP1Q96B01 352 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 LRIG1Q96JA1 1093 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 TUBGCP5Q96RT8 1024 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 SUV39H2Q9H5I1 410 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 C3orf14Q9HBI5 128 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 IL23AQ9NPF7 189 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 TMEM59LQ9UK28 342 aa11.92□□□□□ -0.5
PTPRF-205ENST00000414879 MRTO4Q9UKD2 239 aaKnown RBP11.92□□□□□ -0.5
PTPRF-205ENST00000414879 ISM1B1AKI9 464 aa11.91□□□□□ -0.5
PTPRF-205ENST00000414879 HMGB3O15347 200 aaKnown RBP11.91□□□□□ -0.5
PTPRF-205ENST00000414879 SERPINB7O75635 380 aa11.91□□□□□ -0.5
PTPRF-205ENST00000414879 SLC22A3O75751 556 aa11.91□□□□□ -0.5
PTPRF-205ENST00000414879 CLDN9O95484 217 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms