RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 KIRREL3Q8IZU9 778 aa20.03■□□□□ 0.8
USP39-204ENST00000409766 DTX3LQ8TDB6 740 aa20.03■□□□□ 0.8
USP39-204ENST00000409766 USP13Q92995 863 aaPredicted RBP20.03■□□□□ 0.8
USP39-204ENST00000409766 MARK4Q96L34 752 aa20.03■□□□□ 0.8
USP39-204ENST00000409766 GPR21Q99679 349 aa20.03■□□□□ 0.8
USP39-204ENST00000409766 LBHD1Q9BQE6 289 aaPredicted RBP20.03■□□□□ 0.8
USP39-204ENST00000409766 PLK2Q9NYY3 685 aa20.03■□□□□ 0.8
USP39-204ENST00000409766 GALPQ9UBC7 116 aa20.03■□□□□ 0.8
USP39-204ENST00000409766 TRAV19A0A0A6YYK7 116 aa20.03■□□□□ 0.8
USP39-204ENST00000409766 CCDC189A1A4V9 331 aa20.03■□□□□ 0.8
USP39-204ENST00000409766 PFDN6O15212 129 aa20.03■□□□□ 0.8
USP39-204ENST00000409766 KERAO60938 352 aa20.03■□□□□ 0.8
USP39-204ENST00000409766 PKMP14618 531 aaKnown RBP20.03■□□□□ 0.8
USP39-204ENST00000409766 GJA1P17302 382 aa20.03■□□□□ 0.8
USP39-204ENST00000409766 CD9P21926 228 aa20.03■□□□□ 0.8
USP39-204ENST00000409766 HMGCLP35914 325 aa20.03■□□□□ 0.8
USP39-204ENST00000409766 CLCN4P51793 760 aa20.03■□□□□ 0.8
USP39-204ENST00000409766 RAD51Q06609 339 aa20.03■□□□□ 0.8
USP39-204ENST00000409766 HERC3Q15034 1050 aa20.03■□□□□ 0.8
USP39-204ENST00000409766 ARMC12Q5T9G4 340 aa20.03■□□□□ 0.8
USP39-204ENST00000409766 CAMK1DQ8IU85 385 aa20.03■□□□□ 0.8
USP39-204ENST00000409766 KLHL23Q8NBE8 558 aa20.03■□□□□ 0.8
USP39-204ENST00000409766 STAG3L4Q8TBR4 150 aa20.03■□□□□ 0.8
USP39-204ENST00000409766 MYO19Q96H55 970 aa20.03■□□□□ 0.8
USP39-204ENST00000409766 ZNF570Q96NI8 536 aa20.03■□□□□ 0.8
USP39-204ENST00000409766 FNDC3AQ9Y2H6 1198 aaKnown RBP20.03■□□□□ 0.8
USP39-204ENST00000409766 PYGLP06737 847 aa20.02■□□□□ 0.8
USP39-204ENST00000409766 RPSAP08865 295 aaKnown RBP20.02■□□□□ 0.8
USP39-204ENST00000409766 TSPAN8P19075 237 aa20.02■□□□□ 0.8
USP39-204ENST00000409766 ADARP55265 1226 aaKnown RBP20.02■□□□□ 0.8
USP39-204ENST00000409766 ATP6V0D1P61421 351 aa20.02■□□□□ 0.8
USP39-204ENST00000409766 HTRA4P83105 476 aaPredicted RBP20.02■□□□□ 0.8
USP39-204ENST00000409766 TBL3Q12788 808 aaKnown RBP20.02■□□□□ 0.8
USP39-204ENST00000409766 LMAN2Q12907 356 aa20.02■□□□□ 0.8
USP39-204ENST00000409766 PFKFB4Q16877 469 aa20.02■□□□□ 0.8
USP39-204ENST00000409766 CTSL3PQ5NE16 218 aa20.02■□□□□ 0.8
USP39-204ENST00000409766 TPGS1Q6ZTW0 290 aa20.02■□□□□ 0.8
USP39-204ENST00000409766 FIBCD1Q8N539 461 aa20.02■□□□□ 0.8
USP39-204ENST00000409766 KREMEN2Q8NCW0 462 aa20.02■□□□□ 0.8
USP39-204ENST00000409766 OR6K2Q8NGY2 324 aa20.02■□□□□ 0.8
USP39-204ENST00000409766 FIBINQ8TAL6 211 aa20.02■□□□□ 0.8
USP39-204ENST00000409766 SLC30A3Q99726 388 aa20.02■□□□□ 0.8
USP39-204ENST00000409766 IKZF3Q9UKT9 509 aa20.02■□□□□ 0.8
USP39-204ENST00000409766 PKP3Q9Y446 797 aa20.02■□□□□ 0.8
USP39-204ENST00000409766 AIM2O14862 343 aa20.02■□□□□ 0.79
USP39-204ENST00000409766 PDE5AO76074 875 aa20.02■□□□□ 0.79
USP39-204ENST00000409766 SORBS2O94875 1100 aaKnown RBP20.02■□□□□ 0.79
USP39-204ENST00000409766 SIX3O95343 332 aaPredicted RBP20.02■□□□□ 0.79
USP39-204ENST00000409766 ADH1AP07327 375 aa20.02■□□□□ 0.79
USP39-204ENST00000409766 CTPS1P17812 591 aa20.02■□□□□ 0.79
USP39-204ENST00000409766 CDH13P55290 713 aa20.02■□□□□ 0.79
USP39-204ENST00000409766 SESN3P58005 492 aa20.02■□□□□ 0.79
USP39-204ENST00000409766 AARS2Q5JTZ9 985 aaKnown RBP20.02■□□□□ 0.79
USP39-204ENST00000409766 CYHR1Q6ZMK1 362 aa20.02■□□□□ 0.79
USP39-204ENST00000409766 LYSMD3Q7Z3D4 306 aa20.02■□□□□ 0.79
USP39-204ENST00000409766 RAB44Q7Z6P3 723 aaPredicted RBP20.02■□□□□ 0.79
USP39-204ENST00000409766 FBXW8Q8N3Y1 598 aa20.02■□□□□ 0.79
USP39-204ENST00000409766 NRG4Q8WWG1 115 aa20.02■□□□□ 0.79
USP39-204ENST00000409766 CLP1Q92989 425 aaKnown RBP20.02■□□□□ 0.79
USP39-204ENST00000409766 DOCK6Q96HP0 2047 aa20.02■□□□□ 0.79
USP39-204ENST00000409766 ASB2Q96Q27 587 aa20.02■□□□□ 0.79
USP39-204ENST00000409766 SLC46A2Q9BY10 475 aa20.02■□□□□ 0.79
USP39-204ENST00000409766 GPR63Q9BZJ6 419 aa20.02■□□□□ 0.79
USP39-204ENST00000409766 IL23AQ9NPF7 189 aa20.02■□□□□ 0.79
USP39-204ENST00000409766 KIAA1522Q9P206 1035 aaPredicted RBP20.02■□□□□ 0.79
USP39-204ENST00000409766 EVLQ9UI08 416 aaPredicted RBP20.02■□□□□ 0.79
USP39-204ENST00000409766 KIAA0100Q14667 2235 aaKnown RBP20.01■□□□□ 0.79
USP39-204ENST00000409766 LEFTY2O00292 366 aa20.01■□□□□ 0.79
USP39-204ENST00000409766 HTRA2O43464 458 aaPredicted RBP20.01■□□□□ 0.79
USP39-204ENST00000409766 NIPSNAP2O75323 286 aa20.01■□□□□ 0.79
USP39-204ENST00000409766 VPS26AO75436 327 aa20.01■□□□□ 0.79
USP39-204ENST00000409766 ALPIP09923 528 aa20.01■□□□□ 0.79
USP39-204ENST00000409766 HSPA8P11142 646 aaKnown RBP20.01■□□□□ 0.79
USP39-204ENST00000409766 CSNK1DP48730 415 aa20.01■□□□□ 0.79
USP39-204ENST00000409766 NUDT2P50583 147 aa20.01■□□□□ 0.79
USP39-204ENST00000409766 MTTPP55157 894 aa20.01■□□□□ 0.79
USP39-204ENST00000409766 SH3BP2P78314 561 aa20.01■□□□□ 0.79
USP39-204ENST00000409766 UGT3A2Q3SY77 523 aa20.01■□□□□ 0.79
USP39-204ENST00000409766 CLEC6AQ6EIG7 209 aa20.01■□□□□ 0.79
USP39-204ENST00000409766 NKAPQ8N5F7 415 aaKnown RBP20.01■□□□□ 0.79
USP39-204ENST00000409766 KYQ8NBH2 561 aa20.01■□□□□ 0.79
USP39-204ENST00000409766 HELZP42694 1942 aaKnown RBP20■□□□□ 0.79
USP39-204ENST00000409766 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP20■□□□□ 0.79
USP39-204ENST00000409766 LRRC14BA6NHZ5 514 aa20■□□□□ 0.79
USP39-204ENST00000409766 ZNF821O75541 412 aaPredicted RBP20■□□□□ 0.79
USP39-204ENST00000409766 TSPAN12O95859 305 aa20■□□□□ 0.79
USP39-204ENST00000409766 HSPA1AP0DMV8 641 aaKnown RBP20■□□□□ 0.79
USP39-204ENST00000409766 HSPA1BP0DMV9 641 aaKnown RBP20■□□□□ 0.79
USP39-204ENST00000409766 CD70P32970 193 aa20■□□□□ 0.79
USP39-204ENST00000409766 VHLP40337 213 aa20■□□□□ 0.79
USP39-204ENST00000409766 PTGER3P43115 390 aa20■□□□□ 0.79
USP39-204ENST00000409766 RPL26P61254 145 aaKnown RBP20■□□□□ 0.79
USP39-204ENST00000409766 CACNG1Q06432 222 aa20■□□□□ 0.79
USP39-204ENST00000409766 PLEKHG6Q3KR16 790 aa20■□□□□ 0.79
USP39-204ENST00000409766 ELMOD1Q8N336 334 aa20■□□□□ 0.79
USP39-204ENST00000409766 KCNJ9Q92806 393 aa20■□□□□ 0.79
USP39-204ENST00000409766 FUBP1Q96AE4 644 aaKnown RBP20■□□□□ 0.79
USP39-204ENST00000409766 CORO1BQ9BR76 489 aa20■□□□□ 0.79
USP39-204ENST00000409766 ABCB8Q9NUT2 735 aa20■□□□□ 0.79
USP39-204ENST00000409766 INTS6Q9UL03 887 aaKnown RBP20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms