RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 OR8D1Q8WZ84 308 aa14□□□□□ -0.17
GPNMB-203ENST00000409458 ERLEC1Q96DZ1 483 aa14□□□□□ -0.17
GPNMB-203ENST00000409458 CCDC97Q96F63 343 aaPredicted RBP14□□□□□ -0.17
GPNMB-203ENST00000409458 LRCH3Q96II8 777 aa14□□□□□ -0.17
GPNMB-203ENST00000409458 GPR78Q96P69 363 aa14□□□□□ -0.17
GPNMB-203ENST00000409458 UNKQ9C0B0 810 aaKnown RBP14□□□□□ -0.17
GPNMB-203ENST00000409458 NMRAL1Q9HBL8 299 aa14□□□□□ -0.17
GPNMB-203ENST00000409458 CACNA2D2Q9NY47 1150 aa14□□□□□ -0.17
GPNMB-203ENST00000409458 PLXNB3Q9ULL4 1909 aa14□□□□□ -0.17
GPNMB-203ENST00000409458 PLXNA2O75051 1894 aa13.99□□□□□ -0.17
GPNMB-203ENST00000409458 GOLGA8CPA6NN73 597 aa13.99□□□□□ -0.17
GPNMB-203ENST00000409458 KPNA3O00505 521 aaPredicted RBP13.99□□□□□ -0.17
GPNMB-203ENST00000409458 BIRC5O15392 142 aa13.99□□□□□ -0.17
GPNMB-203ENST00000409458 KLHL2O95198 593 aa13.99□□□□□ -0.17
GPNMB-203ENST00000409458 PRNPP04156 253 aa13.99□□□□□ -0.17
GPNMB-203ENST00000409458 NEFHP12036 1026 aa13.99□□□□□ -0.17
GPNMB-203ENST00000409458 COL6A2P12110 1019 aa13.99□□□□□ -0.17
GPNMB-203ENST00000409458 ITGALP20701 1170 aa13.99□□□□□ -0.17
GPNMB-203ENST00000409458 KCNA4P22459 653 aa13.99□□□□□ -0.17
GPNMB-203ENST00000409458 GLRBP48167 497 aa13.99□□□□□ -0.17
GPNMB-203ENST00000409458 SUOXP51687 545 aa13.99□□□□□ -0.17
GPNMB-203ENST00000409458 RALGDSQ12967 914 aa13.99□□□□□ -0.17
GPNMB-203ENST00000409458 NFATC2Q13469 925 aa13.99□□□□□ -0.17
GPNMB-203ENST00000409458 ELAVL3Q14576 367 aaKnown RBP13.99□□□□□ -0.17
GPNMB-203ENST00000409458 CHI3L2Q15782 390 aa13.99□□□□□ -0.17
GPNMB-203ENST00000409458 CHRNA6Q15825 494 aa13.99□□□□□ -0.17
GPNMB-203ENST00000409458 DBN1Q16643 649 aa13.99□□□□□ -0.17
GPNMB-203ENST00000409458 PREPLQ4J6C6 727 aaPredicted RBP13.99□□□□□ -0.17
GPNMB-203ENST00000409458 CTSL3PQ5NE16 218 aa13.99□□□□□ -0.17
GPNMB-203ENST00000409458 LRRC8EQ6NSJ5 796 aa13.99□□□□□ -0.17
GPNMB-203ENST00000409458 TMEM207Q6UWW9 146 aa13.99□□□□□ -0.17
GPNMB-203ENST00000409458 SNX20Q7Z614 316 aa13.99□□□□□ -0.17
GPNMB-203ENST00000409458 LCA5Q86VQ0 697 aa13.99□□□□□ -0.17
GPNMB-203ENST00000409458 NUDCD3Q8IVD9 361 aa13.99□□□□□ -0.17
GPNMB-203ENST00000409458 HCAR2Q8TDS4 363 aa13.99□□□□□ -0.17
GPNMB-203ENST00000409458 CSGALNACT1Q8TDX6 532 aa13.99□□□□□ -0.17
GPNMB-203ENST00000409458 ANKRD49Q8WVL7 239 aa13.99□□□□□ -0.17
GPNMB-203ENST00000409458 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.99□□□□□ -0.17
GPNMB-203ENST00000409458 ARRDC3Q96B67 414 aa13.99□□□□□ -0.17
GPNMB-203ENST00000409458 NXNL1Q96CM4 212 aa13.99□□□□□ -0.17
GPNMB-203ENST00000409458 TSNARE1Q96NA8 513 aa13.99□□□□□ -0.17
GPNMB-203ENST00000409458 BIRC8Q96P09 236 aa13.99□□□□□ -0.17
GPNMB-203ENST00000409458 PITPNM3Q9BZ71 974 aa13.99□□□□□ -0.17
GPNMB-203ENST00000409458 GPAMQ9HCL2 828 aa13.99□□□□□ -0.17
GPNMB-203ENST00000409458 IGSF5Q9NSI5 407 aa13.99□□□□□ -0.17
GPNMB-203ENST00000409458 COPG2Q9UBF2 871 aa13.99□□□□□ -0.17
GPNMB-203ENST00000409458 APPL1Q9UKG1 709 aa13.99□□□□□ -0.17
GPNMB-203ENST00000409458 RUVBL2Q9Y230 463 aaKnown RBP13.99□□□□□ -0.17
GPNMB-203ENST00000409458 VPS9D1Q9Y2B5 631 aa13.99□□□□□ -0.17
GPNMB-203ENST00000409458 MED16Q9Y2X0 877 aa13.99□□□□□ -0.17
GPNMB-203ENST00000409458 TRIOBPQ9H2D6 2365 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 TRBV5-4A0A0C4DH59 114 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 G3V2L1 256 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 TK2O00142 265 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 EDF1O60869 148 aaKnown RBP13.98□□□□□ -0.17
GPNMB-203ENST00000409458 EPHX1P07099 455 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 SBK3P0C264 359 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 KCNA5P22460 613 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 GALK1P51570 392 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 ARHGEF7Q14155 803 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 CSHL1Q14406 222 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 ZSCAN26Q16670 478 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 DPPA4Q7L190 304 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 PIGWQ7Z7B1 504 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 TBC1D1Q86TI0 1168 aaPredicted RBP13.98□□□□□ -0.17
GPNMB-203ENST00000409458 SERPINA9Q86WD7 417 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 C10orf107Q8IVU9 208 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 TMIEQ8NEW7 156 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 PIP4K2CQ8TBX8 421 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 HEXDCQ8WVB3 486 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 EZH1Q92800 747 aaPredicted RBP13.98□□□□□ -0.17
GPNMB-203ENST00000409458 FAM136AQ96C01 138 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 SEC16BQ96JE7 1060 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 SCYL1Q96KG9 808 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 FAM129BQ96TA1 746 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 P2RY13Q9BPV8 354 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 ELAC2Q9BQ52 826 aaKnown RBP13.98□□□□□ -0.17
GPNMB-203ENST00000409458 ASB8Q9H765 288 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 XPR1Q9UBH6 696 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 PPM1HQ9ULR3 514 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 ITM2BQ9Y287 266 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 KLF11O14901 512 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 PFDN6O15212 129 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 SPINT1O43278 529 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 MBTPS2O43462 519 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 FGF3P11487 239 aaPredicted RBP13.98□□□□□ -0.17
GPNMB-203ENST00000409458 CPA3P15088 417 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 ZNF30P17039 623 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 UGT1A6P19224 532 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 UGT1A1P22309 533 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 UGT1A4P22310 534 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 XPAP23025 273 aaPredicted RBP13.98□□□□□ -0.17
GPNMB-203ENST00000409458 ITGB7P26010 798 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 ACRV1P26436 265 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 UGT1A3P35503 534 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 UGT1A5P35504 534 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 MMP12P39900 470 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 PTGER3P43115 390 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 SPINT3P49223 89 aa13.98□□□□□ -0.17
GPNMB-203ENST00000409458 SMAD4Q13485 552 aaKnown RBP13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms