RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 SH2D5Q6ZV89 423 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 HSD11B1LQ7Z5J1 315 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 PIM3Q86V86 326 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 CEP97Q8IW35 865 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 SUGP1Q8IWZ8 645 aaKnown RBP3.69□□□□□ -1.82
RTN4-208ENST00000404909 IL17RCQ8NAC3 791 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 ARMC2Q8NEN0 867 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 FLCNQ8NFG4 579 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 FAM3CQ92520 227 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 GPR22Q99680 433 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 OMDQ99983 421 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 SPATA16Q9BXB7 569 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 SLC6A17Q9H1V8 727 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 C8orf33Q9H7E9 229 aaPredicted RBP3.69□□□□□ -1.82
RTN4-208ENST00000404909 SARS2Q9NP81 518 aaKnown RBP3.69□□□□□ -1.82
RTN4-208ENST00000404909 DKK3Q9UBP4 350 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 APPL1Q9UKG1 709 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 CA14Q9ULX7 337 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 FAM50BQ9Y247 325 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 COQ6Q9Y2Z9 468 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 VWA7Q9Y334 891 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 DENND4AQ7Z401 1863 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 PFDN6O15212 129 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 MMP20O60882 483 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 RNASEH2AO75792 299 aaKnown RBP3.69□□□□□ -1.82
RTN4-208ENST00000404909 ADRB3P13945 408 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 HNRNPLP14866 589 aaKnown RBP eCLIP3.69□□□□□ -1.825e-9■■■□□ 16.4
RTN4-208ENST00000404909 DRD1P21728 446 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 LSP1P33241 339 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 SPINT3P49223 89 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 TTPAP49638 278 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 LIG3P49916 1009 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 NEK3P51956 506 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 SEC24CP53992 1094 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 CDKN2DP55273 166 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 WDR4P57081 412 aaKnown RBP3.69□□□□□ -1.82
RTN4-208ENST00000404909 RAB10P61026 200 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 IL9RQ01113 521 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 DNAJC3Q13217 504 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 CST6Q15828 149 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 AARS2Q5JTZ9 985 aaKnown RBP3.69□□□□□ -1.82
RTN4-208ENST00000404909 N4BP2L1Q5TBK1 243 aaPredicted RBP3.69□□□□□ -1.82
RTN4-208ENST00000404909 HECTD2Q5U5R9 776 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 FAM46CQ5VWP2 391 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 TIFABQ6ZNK6 161 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 ERN2Q76MJ5 926 aaKnown RBP3.69□□□□□ -1.82
RTN4-208ENST00000404909 SNX20Q7Z614 316 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 SERPINA9Q86WD7 417 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 LMNTD2Q8IXW0 634 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 PLD6Q8N2A8 252 aaKnown RBP3.69□□□□□ -1.82
RTN4-208ENST00000404909 GPR150Q8NGU9 434 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 RPLP0P6Q8NHW5 317 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 ZNF398Q8TD17 642 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 DNASE1L2Q92874 299 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 CCDC97Q96F63 343 aaPredicted RBP3.69□□□□□ -1.82
RTN4-208ENST00000404909 SGSM3Q96HU1 749 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 TSNARE1Q96NA8 513 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 OLFM1Q99784 485 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 MCMBPQ9BTE3 642 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 MKRN2Q9H000 416 aaKnown RBP3.69□□□□□ -1.82
RTN4-208ENST00000404909 PKD2L2Q9NZM6 624 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 PPIL1Q9Y3C6 166 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 MTF2Q9Y483 593 aaPredicted RBP3.69□□□□□ -1.82
RTN4-208ENST00000404909 A0A1W2PP55 124 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 IQCF5A8MTL0 148 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 H7C0S8 307 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 GAPDHSO14556 408 aaPredicted RBP3.69□□□□□ -1.82
RTN4-208ENST00000404909 LZTS3O60299 673 aaPredicted RBP3.69□□□□□ -1.82
RTN4-208ENST00000404909 ADAM23O75077 832 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 MTX2O75431 263 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 RHOBTB1O94844 696 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 PCDH8O95206 1070 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 ZWINTO95229 277 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 VIMP08670 466 aaKnown RBP3.69□□□□□ -1.82
RTN4-208ENST00000404909 SRFP11831 508 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 ZNF30P17039 623 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 ITGB6P18564 788 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 CHRM3P20309 590 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 OGNP20774 298 aaKnown RBP3.69□□□□□ -1.82
RTN4-208ENST00000404909 CRHR1P34998 444 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 CA5AP35218 305 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 MMP12P39900 470 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 P2RY2P41231 377 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 CLCN5P51795 746 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 POU4F1Q01851 419 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 TYSND1Q2T9J0 566 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 ATP13A5Q4VNC0 1218 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 ZNF549Q6P9A3 640 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 DPPA4Q7L190 304 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 TMPRSS6Q8IU80 811 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 HDDC3Q8N4P3 179 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 CLDN19Q8N6F1 224 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 MAFAQ8NHW3 353 aaPredicted RBP3.69□□□□□ -1.82
RTN4-208ENST00000404909 ACMSDQ8TDX5 336 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 ATXN2LQ8WWM7 1075 aaKnown RBP3.69□□□□□ -1.82
RTN4-208ENST00000404909 LPGAT1Q92604 370 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 SCYL1Q96KG9 808 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 TTC1Q99614 292 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 RIOK2Q9BVS4 552 aaKnown RBP3.69□□□□□ -1.82
RTN4-208ENST00000404909 BOCQ9BWV1 1114 aa3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms