RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 ZNF284Q2VY69 593 aa18.47■□□□□ 0.55
USP48-204ENST00000400301 OR9I1Q8NGQ6 314 aa18.47■□□□□ 0.55
USP48-204ENST00000400301 CEP19Q96LK0 163 aa18.47■□□□□ 0.55
USP48-204ENST00000400301 FKBPLQ9UIM3 349 aa18.47■□□□□ 0.55
USP48-204ENST00000400301 TMCO1Q9UM00 188 aa18.47■□□□□ 0.55
USP48-204ENST00000400301 E7ENX8 843 aa18.47■□□□□ 0.55
USP48-204ENST00000400301 INSIG1O15503 277 aa18.47■□□□□ 0.55
USP48-204ENST00000400301 PARNO95453 639 aaKnown RBP18.47■□□□□ 0.55
USP48-204ENST00000400301 EOMESO95936 686 aa18.47■□□□□ 0.55
USP48-204ENST00000400301 MT-ND1P03886 318 aa18.47■□□□□ 0.55
USP48-204ENST00000400301 OR56A5P0C7T3 313 aa18.47■□□□□ 0.55
USP48-204ENST00000400301 PIK3CGP48736 1102 aa18.47■□□□□ 0.55
USP48-204ENST00000400301 IL5RAQ01344 420 aa18.47■□□□□ 0.55
USP48-204ENST00000400301 PAQR3Q6TCH7 311 aa18.47■□□□□ 0.55
USP48-204ENST00000400301 ZNF534Q76KX8 674 aa18.47■□□□□ 0.55
USP48-204ENST00000400301 KHSRPQ92945 711 aaKnown RBP eCLIP18.47■□□□□ 0.552e-7■■■■□ 21
USP48-204ENST00000400301 FEM1CQ96JP0 617 aa18.47■□□□□ 0.55
USP48-204ENST00000400301 SLC39A3Q9BRY0 314 aa18.47■□□□□ 0.55
USP48-204ENST00000400301 WDR6Q9NNW5 1121 aaKnown RBP18.47■□□□□ 0.55
USP48-204ENST00000400301 PBLDP30039 288 aaPredicted RBP18.47■□□□□ 0.55
USP48-204ENST00000400301 CRHR2Q13324 411 aa18.47■□□□□ 0.55
USP48-204ENST00000400301 DMC1Q14565 340 aa18.47■□□□□ 0.55
USP48-204ENST00000400301 CPSF6Q16630 551 aaKnown RBP eCLIP18.47■□□□□ 0.557e-8■■■□□ 15.3
USP48-204ENST00000400301 SPATA19Q7Z5L4 167 aa18.47■□□□□ 0.55
USP48-204ENST00000400301 EID3Q8N140 333 aa18.47■□□□□ 0.55
USP48-204ENST00000400301 C2CD4AQ8NCU7 369 aaPredicted RBP18.47■□□□□ 0.55
USP48-204ENST00000400301 OR10T2Q8NGX3 314 aa18.47■□□□□ 0.55
USP48-204ENST00000400301 CIPCQ9C0C6 399 aa18.47■□□□□ 0.55
USP48-204ENST00000400301 COQ10BQ9H8M1 238 aa18.47■□□□□ 0.55
USP48-204ENST00000400301 ARIH1Q9Y4X5 557 aaPredicted RBP18.47■□□□□ 0.55
USP48-204ENST00000400301 SH3BGRLO75368 114 aa18.46■□□□□ 0.55
USP48-204ENST00000400301 SATL1Q86VE3 508 aa18.46■□□□□ 0.55
USP48-204ENST00000400301 CPNE9Q8IYJ1 553 aa18.46■□□□□ 0.55
USP48-204ENST00000400301 MCOLN3Q8TDD5 553 aa18.46■□□□□ 0.55
USP48-204ENST00000400301 YME1L1Q96TA2 773 aa18.46■□□□□ 0.55
USP48-204ENST00000400301 CLK4Q9HAZ1 481 aaKnown RBP18.46■□□□□ 0.55
USP48-204ENST00000400301 PLK2Q9NYY3 685 aa18.46■□□□□ 0.55
USP48-204ENST00000400301 PNMA8BQ9ULN7 279 aaPredicted RBP18.46■□□□□ 0.55
USP48-204ENST00000400301 GNG14A0A1W2PPG7 69 aa18.46■□□□□ 0.55
USP48-204ENST00000400301 OGNP20774 298 aaKnown RBP18.46■□□□□ 0.55
USP48-204ENST00000400301 HERVK_113P63132 956 aa18.46■□□□□ 0.55
USP48-204ENST00000400301 SMARCB1Q12824 385 aa18.46■□□□□ 0.55
USP48-204ENST00000400301 IL23RQ5VWK5 629 aa18.46■□□□□ 0.55
USP48-204ENST00000400301 CBR4Q8N4T8 237 aa18.46■□□□□ 0.55
USP48-204ENST00000400301 ATG16L2Q8NAA4 619 aa18.46■□□□□ 0.55
USP48-204ENST00000400301 ERVK-6Q9BXR3 956 aa18.46■□□□□ 0.55
USP48-204ENST00000400301 POLR3HQ9Y535 204 aaPredicted RBP18.46■□□□□ 0.55
USP48-204ENST00000400301 MGAT4DA6NG13 374 aa18.46■□□□□ 0.55
USP48-204ENST00000400301 PTGES3LE9PB15 166 aa18.46■□□□□ 0.55
USP48-204ENST00000400301 SOAT1P35610 550 aa18.46■□□□□ 0.55
USP48-204ENST00000400301 C16orf72Q14CZ0 275 aa18.46■□□□□ 0.55
USP48-204ENST00000400301 GCNT7Q6ZNI0 430 aa18.46■□□□□ 0.55
USP48-204ENST00000400301 PLD3Q8IV08 490 aa18.46■□□□□ 0.55
USP48-204ENST00000400301 CEP97Q8IW35 865 aa18.46■□□□□ 0.55
USP48-204ENST00000400301 HOMEZQ8IX15 550 aa18.46■□□□□ 0.55
USP48-204ENST00000400301 CDKN2AIPNLQ96HQ2 116 aa18.46■□□□□ 0.55
USP48-204ENST00000400301 RPL17P18621 184 aaKnown RBP18.45■□□□□ 0.54
USP48-204ENST00000400301 PRIM2P49643 509 aa18.45■□□□□ 0.54
USP48-204ENST00000400301 PRKCZQ05513 592 aa18.45■□□□□ 0.54
USP48-204ENST00000400301 PTPRCAPQ14761 206 aa18.45■□□□□ 0.54
USP48-204ENST00000400301 RALGPS2Q86X27 583 aaPredicted RBP18.45■□□□□ 0.54
USP48-204ENST00000400301 MICU2Q8IYU8 434 aa18.45■□□□□ 0.54
USP48-204ENST00000400301 HJURPQ8NCD3 748 aaPredicted RBP18.45■□□□□ 0.54
USP48-204ENST00000400301 MAPK15Q8TD08 544 aa18.45■□□□□ 0.54
USP48-204ENST00000400301 IRAK4Q9NWZ3 460 aa18.45■□□□□ 0.54
USP48-204ENST00000400301 EMCNQ9ULC0 261 aa18.45■□□□□ 0.54
USP48-204ENST00000400301 DNAJA2O60884 412 aa18.45■□□□□ 0.54
USP48-204ENST00000400301 CYP2A7P20853 494 aa18.45■□□□□ 0.54
USP48-204ENST00000400301 CLK1P49759 484 aaKnown RBP18.45■□□□□ 0.54
USP48-204ENST00000400301 CDH4P55283 916 aa18.45■□□□□ 0.54
USP48-204ENST00000400301 PABPC1LQ4VXU2 614 aaKnown RBP18.45■□□□□ 0.54
USP48-204ENST00000400301 ALFQ53S48 1182 aa18.45■□□□□ 0.54
USP48-204ENST00000400301 MS4A13Q5J8X5 152 aa18.45■□□□□ 0.54
USP48-204ENST00000400301 ABRAXAS1Q6UWZ7 409 aa18.45■□□□□ 0.54
USP48-204ENST00000400301 ARHGAP22Q7Z5H3 698 aa18.45■□□□□ 0.54
USP48-204ENST00000400301 PDSS2Q86YH6 399 aa18.45■□□□□ 0.54
USP48-204ENST00000400301 NAT14Q8WUY8 206 aa18.45■□□□□ 0.54
USP48-204ENST00000400301 C20orf27Q9GZN8 174 aa18.45■□□□□ 0.54
USP48-204ENST00000400301 AKTIPQ9H8T0 292 aa18.45■□□□□ 0.54
USP48-204ENST00000400301 POLR1BQ9H9Y6 1135 aa18.45■□□□□ 0.54
USP48-204ENST00000400301 ZNF556Q9HAH1 456 aa18.45■□□□□ 0.54
USP48-204ENST00000400301 EIF2B4Q9UI10 523 aaKnown RBP18.45■□□□□ 0.54
USP48-204ENST00000400301 C5orf58C9J3I9 102 aa18.45■□□□□ 0.54
USP48-204ENST00000400301 OR4F21O95013 312 aa18.45■□□□□ 0.54
USP48-204ENST00000400301 SERPIND1P05546 499 aa18.45■□□□□ 0.54
USP48-204ENST00000400301 POLR2JP52435 117 aaKnown RBP18.45■□□□□ 0.54
USP48-204ENST00000400301 LIPEQ05469 1076 aa18.45■□□□□ 0.54
USP48-204ENST00000400301 AP5B1Q2VPB7 878 aa18.45■□□□□ 0.54
USP48-204ENST00000400301 CILP2Q8IUL8 1156 aa18.45■□□□□ 0.54
USP48-204ENST00000400301 RBFAQ8N0V3 343 aa18.45■□□□□ 0.54
USP48-204ENST00000400301 DBF4BQ8NFT6 615 aa18.45■□□□□ 0.54
USP48-204ENST00000400301 CCSER2Q9H7U1 834 aa18.45■□□□□ 0.54
USP48-204ENST00000400301 SCML2Q9UQR0 700 aa18.45■□□□□ 0.54
USP48-204ENST00000400301 MAFKO60675 156 aa18.45■□□□□ 0.54
USP48-204ENST00000400301 ZNF865P0CJ78 1059 aaPredicted RBP18.45■□□□□ 0.54
USP48-204ENST00000400301 ADCK2Q7Z695 626 aa18.45■□□□□ 0.54
USP48-204ENST00000400301 DDHD1Q8NEL9 900 aa18.45■□□□□ 0.54
USP48-204ENST00000400301 RNF217Q8TC41 542 aa18.45■□□□□ 0.54
USP48-204ENST00000400301 ROPN1LQ96C74 230 aa18.45■□□□□ 0.54
USP48-204ENST00000400301 ASB9Q96DX5 294 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms