RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 OGNP20774 298 aaKnown RBP14.16□□□□□ -0.14
SKA1-202ENST00000398452 LHCGRP22888 699 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 CNTFP26441 200 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 OXTRP30559 389 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 SPRP35270 261 aaPredicted RBP14.16□□□□□ -0.14
SKA1-202ENST00000398452 RPS9P46781 194 aaKnown RBP14.16□□□□□ -0.14
SKA1-202ENST00000398452 SPINT3P49223 89 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 TTPAP49638 278 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 LIG3P49916 1009 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 METAP1P53582 386 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 PTSQ03393 145 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 CACNG1Q06432 222 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 ZNF844Q08AG5 666 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 SGCGQ13326 291 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 PTPRCAPQ14761 206 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 PTPRRQ15256 657 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 TMED2Q15363 201 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 PIP5KL1Q5T9C9 394 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 RNF187Q5TA31 235 aaPredicted RBP14.16□□□□□ -0.14
SKA1-202ENST00000398452 GRTP1Q5TC63 336 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 LYPLAL1Q5VWZ2 237 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 ANO7Q6IWH7 933 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 FAM151BQ6UXP7 276 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 LIPIQ6XZB0 460 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 SNX20Q7Z614 316 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 STRA8Q7Z7C7 330 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 AADATQ8N5Z0 425 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 SCG3Q8WXD2 468 aaKnown RBP14.16□□□□□ -0.14
SKA1-202ENST00000398452 ULK4Q96C45 1275 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 SPATA16Q9BXB7 569 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 BTBD1Q9H0C5 482 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 IRF2BPLQ9H1B7 796 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 CCDC68Q9H2F9 335 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 CHRDQ9H2X0 955 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 ASB8Q9H765 288 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 ZNF446Q9NWS9 450 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 IL1RAPL1Q9NZN1 696 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 ITM2BQ9Y287 266 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 TBC1D3DA0A087WVF3 549 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 TBC1D3IA0A087WXS9 549 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 TBC1D3EA0A087X179 549 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 TBC1D3KA0A087X1G2 549 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 TBC1D3FA6NER0 549 aaPredicted RBP14.15□□□□□ -0.14
SKA1-202ENST00000398452 PRR23AA6NEV1 266 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 FAM47DPA6NHR8 397 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 GOLGA8CPA6NN73 597 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 TBC1D3LB9A6J9 549 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 F8W8V4 182 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 CCL22O00626 93 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 MMP20O60882 483 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 SRP72O76094 671 aaKnown RBP14.15□□□□□ -0.14
SKA1-202ENST00000398452 APBB3O95704 486 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 PYGLP06737 847 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 TBC1D3HP0C7X1 549 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 BPIP17213 487 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 GABRG2P18507 467 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 AOC1P19801 751 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 DRD3P35462 400 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 ARCN1P48444 511 aaKnown RBP14.15□□□□□ -0.14
SKA1-202ENST00000398452 CD151P48509 253 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 ARSDP51689 593 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 SLC12A2P55011 1212 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 CSE1LP55060 971 aaKnown RBP14.15□□□□□ -0.14
SKA1-202ENST00000398452 RPS21P63220 83 aaKnown RBP14.15□□□□□ -0.14
SKA1-202ENST00000398452 EFTUD2Q15029 972 aaKnown RBP eCLIP14.15□□□□□ -0.14
SKA1-202ENST00000398452 CDKN3Q16667 212 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 GPR33Q49SQ1 333 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 SETMARQ53H47 684 aaPredicted RBP14.15□□□□□ -0.14
SKA1-202ENST00000398452 UBAP2Q5T6F2 1119 aaKnown RBP14.15□□□□□ -0.14
SKA1-202ENST00000398452 TEDDM1Q5T9Z0 273 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 AGBL4Q5VU57 503 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 TBC1D3GQ6DHY5 549 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 TBC1D3CQ6IPX1 549 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 KIAA1161Q6NSJ0 714 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 CERS6Q6ZMG9 384 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 FAM124AQ86V42 546 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 TDRPQ86YL5 185 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 UNC5BQ8IZJ1 945 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 TBC1D3Q8IZP1 549 aaPredicted RBP14.15□□□□□ -0.14
SKA1-202ENST00000398452 EPS8L3Q8TE67 593 aaKnown RBP14.15□□□□□ -0.14
SKA1-202ENST00000398452 SLC44A1Q8WWI5 657 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 VOPP1Q96AW1 172 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 CLDN23Q96B33 292 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 AP2M1Q96CW1 435 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 NUS1Q96E22 293 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 TCF12Q99081 682 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 SLC6A17Q9H1V8 727 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 KDM4CQ9H3R0 1056 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 SUDS3Q9H7L9 328 aaPredicted RBP14.15□□□□□ -0.14
SKA1-202ENST00000398452 SGK2Q9HBY8 427 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 PREBQ9HCU5 417 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 TBK1Q9UHD2 729 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 ZNF180Q9UJW8 692 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 FBXO5Q9UKT4 447 aa14.15□□□□□ -0.14
SKA1-202ENST00000398452 PLRG1O43660 514 aaKnown RBP14.14□□□□□ -0.15
SKA1-202ENST00000398452 SASH3O75995 380 aa14.14□□□□□ -0.15
SKA1-202ENST00000398452 DCNP07585 359 aaKnown RBP14.14□□□□□ -0.15
SKA1-202ENST00000398452 C6P13671 934 aa14.14□□□□□ -0.15
SKA1-202ENST00000398452 ETV3P41162 512 aa14.14□□□□□ -0.15
SKA1-202ENST00000398452 CXCL12P48061 93 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms