RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 NMRK1Q9NWW6 199 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 B4GALT6Q9UBX8 382 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 SLC2A6Q9UGQ3 507 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 IL36AQ9UHA7 158 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 FBXO5Q9UKT4 447 aa10.29□□□□□ -0.76
COL6A3-205ENST00000392004 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 TMEM63AO94886 807 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 GRIA2P42262 883 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 ZNF234Q14588 700 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 KIF19Q2TAC6 998 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 AARS2Q5JTZ9 985 aaKnown RBP10.28□□□□□ -0.76
COL6A3-205ENST00000392004 RNF220Q5VTB9 566 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 TTC39BQ5VTQ0 682 aaPredicted RBP10.28□□□□□ -0.76
COL6A3-205ENST00000392004 NADSYN1Q6IA69 706 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 CGB2Q6NT52 195 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 TRMT10BQ6PF06 316 aaKnown RBP10.28□□□□□ -0.76
COL6A3-205ENST00000392004 CFAP206Q8IYR0 622 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 TMEFF1Q8IYR6 380 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 ZDHHC14Q8IZN3 488 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 ADGRG2Q8IZP9 1017 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 DTX3LQ8TDB6 740 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 ASB16Q96NS5 453 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 TRAPPC9Q96Q05 1148 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 RIOK2Q9BVS4 552 aaKnown RBP10.28□□□□□ -0.76
COL6A3-205ENST00000392004 SAR1AQ9NR31 198 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 LAMA2P24043 3122 aaKnown RBP10.28□□□□□ -0.76
COL6A3-205ENST00000392004 GLYATL1P3A0A0U1RQE8 302 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 CPED1A4D0V7 1026 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 ANKRD33BA6NCL7 494 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 SPECC1L-ADORA2AF8WAN1 911 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 CIB2O75838 187 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 ESRRAP11474 423 aaPredicted RBP10.28□□□□□ -0.76
COL6A3-205ENST00000392004 ACP5P13686 325 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 VCLP18206 1134 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 OVGP1Q12889 678 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 MYO1HQ8N1T3 1032 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 DCAF4L2Q8NA75 395 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 CXorf38Q8TB03 319 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 PPP1R2P1Q96PQ5 205 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 FRMD8P1Q9BZ68 369 aaPredicted RBP10.28□□□□□ -0.76
COL6A3-205ENST00000392004 C12orf65Q9H3J6 166 aaKnown RBP10.28□□□□□ -0.76
COL6A3-205ENST00000392004 PDP2Q9P2J9 529 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 RCOR3Q9P2K3 495 aaPredicted RBP10.28□□□□□ -0.76
COL6A3-205ENST00000392004 DRG1Q9Y295 367 aaKnown RBP10.28□□□□□ -0.76
COL6A3-205ENST00000392004 CA5BQ9Y2D0 317 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 ZSWIM8A7E2V4 1837 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 TMEM265A0A087WTH1 108 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 HHLA1C9JL84 531 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 CCNT2O60583 730 aaKnown RBP10.28□□□□□ -0.76
COL6A3-205ENST00000392004 EDF1O60869 148 aaKnown RBP10.28□□□□□ -0.76
COL6A3-205ENST00000392004 TBX10O75333 385 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 ALDH4A1P30038 563 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 SERPINB4P48594 390 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 WDR4P57081 412 aaKnown RBP10.28□□□□□ -0.76
COL6A3-205ENST00000392004 RING1Q06587 406 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 ZNF460Q14592 562 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 PKDCCQ504Y2 493 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 PPP1R15BQ5SWA1 713 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 CRTC1Q6UUV9 634 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 ZCCHC23Q6ZST2 131 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 MTDHQ86UE4 582 aaKnown RBP10.28□□□□□ -0.76
COL6A3-205ENST00000392004 FRMD1Q8N878 549 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 ZFAND2BQ8WV99 257 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 CXorf40BQ96DE9 158 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 DTNBP1Q96EV8 351 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 CERS2Q96G23 380 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 AGAP2Q99490 1192 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 PHF7Q9BWX1 381 aaPredicted RBP10.28□□□□□ -0.76
COL6A3-205ENST00000392004 TRIM55Q9BYV6 548 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 FOXP3Q9BZS1 431 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 ANGPTL2Q9UKU9 493 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 ACOT9Q9Y305 439 aa10.28□□□□□ -0.76
COL6A3-205ENST00000392004 CFLARO15519 480 aa10.27□□□□□ -0.76
COL6A3-205ENST00000392004 TM7SF2O76062 418 aa10.27□□□□□ -0.76
COL6A3-205ENST00000392004 FGF1P05230 155 aa10.27□□□□□ -0.76
COL6A3-205ENST00000392004 HMOX2P30519 316 aa10.27□□□□□ -0.76
COL6A3-205ENST00000392004 NTSR1P30989 418 aa10.27□□□□□ -0.76
COL6A3-205ENST00000392004 ACTR1BP42025 376 aa10.27□□□□□ -0.76
COL6A3-205ENST00000392004 NPY2RP49146 381 aa10.27□□□□□ -0.76
COL6A3-205ENST00000392004 ACTR1AP61163 376 aa10.27□□□□□ -0.76
COL6A3-205ENST00000392004 MRPL58Q14197 206 aaKnown RBP10.27□□□□□ -0.76
COL6A3-205ENST00000392004 PDK4Q16654 411 aa10.27□□□□□ -0.76
COL6A3-205ENST00000392004 MMEL1Q495T6 779 aa10.27□□□□□ -0.76
COL6A3-205ENST00000392004 SYCE2Q6PIF2 218 aa10.27□□□□□ -0.76
COL6A3-205ENST00000392004 C4orf22Q6V702 233 aa10.27□□□□□ -0.76
COL6A3-205ENST00000392004 NIPA2Q8N8Q9 360 aa10.27□□□□□ -0.76
COL6A3-205ENST00000392004 OR4L1Q8NH43 312 aa10.27□□□□□ -0.76
COL6A3-205ENST00000392004 RFWD2Q8NHY2 731 aa10.27□□□□□ -0.76
COL6A3-205ENST00000392004 SETD7Q8WTS6 366 aaKnown RBP10.27□□□□□ -0.76
COL6A3-205ENST00000392004 SPACA7Q96KW9 195 aa10.27□□□□□ -0.76
COL6A3-205ENST00000392004 KLHL25Q9H0H3 589 aa10.27□□□□□ -0.76
COL6A3-205ENST00000392004 CARS2Q9HA77 564 aaKnown RBP10.27□□□□□ -0.76
COL6A3-205ENST00000392004 CASS4Q9NQ75 786 aa10.27□□□□□ -0.76
COL6A3-205ENST00000392004 A0A096LPK6 155 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 GSAPA4D1B5 854 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 GPR39O43194 453 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 APOA4P06727 396 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 OR56A5P0C7T3 313 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 HLA-DPA1P20036 260 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 ADRA1DP25100 572 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms