RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 VPS28Q9UK41 221 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 TRAF6Q9Y4K3 522 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 KCTD3Q9Y597 815 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 PCDHGA8Q9Y5G5 932 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 COL4A4P53420 1690 aaPredicted RBP9.62□□□□□ -0.87
COL6A3-204ENST00000392003 CEP350Q5VT06 3117 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 PSMD12O00232 456 aaPredicted RBP9.62□□□□□ -0.87
COL6A3-204ENST00000392003 PFDN6O15212 129 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 CRTAMO95727 393 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 GOT2P00505 430 aaKnown RBP9.62□□□□□ -0.87
COL6A3-204ENST00000392003 THOP1P52888 689 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 TLE2Q04725 743 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 GALNT3Q14435 633 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 RFTN1Q14699 578 aaPredicted RBP9.62□□□□□ -0.87
COL6A3-204ENST00000392003 CYTH1Q15438 398 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 PDSS2Q86YH6 399 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 ST13P4Q8IZP2 240 aaPredicted RBP9.62□□□□□ -0.87
COL6A3-204ENST00000392003 DLG3Q92796 817 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 GATA6Q92908 595 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 UBXN10Q96LJ8 280 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 ASB2Q96Q27 587 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 NPAS2Q99743 824 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 TRPC7Q9HCX4 862 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 MARCH4Q9P2E8 410 aaPredicted RBP9.62□□□□□ -0.87
COL6A3-204ENST00000392003 KLHL42Q9P2K6 505 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 DNMT3LQ9UJW3 386 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 ADAMTS6Q9UKP5 1117 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 NYNRINQ9P2P1 1898 aaKnown RBP9.62□□□□□ -0.87
COL6A3-204ENST00000392003 MIA3Q5JRA6 1907 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 FAM92AA1XBS5 289 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 LDB2O43679 373 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 CRCPO75575 148 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 NDST3O95803 873 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 LYNP07948 512 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 ZCCHC18P0CG32 403 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 UQCRBP14927 111 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 PEX2P28328 305 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 ATP5C1P36542 298 aaKnown RBP9.62□□□□□ -0.87
COL6A3-204ENST00000392003 ALDH1A3P47895 512 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 MRPS22P82650 360 aaKnown RBP9.62□□□□□ -0.87
COL6A3-204ENST00000392003 GALNT1Q10472 559 aaPredicted RBP9.62□□□□□ -0.87
COL6A3-204ENST00000392003 IKBKEQ14164 716 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 SLC14A2Q15849 920 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 PPP2R2DQ66LE6 453 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 GK5Q6ZS86 529 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 FAM126BQ8IXS8 530 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 CFAP52Q8N1V2 620 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 RNF148Q8N7C7 305 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 LSM14AQ8ND56 463 aaKnown RBP9.62□□□□□ -0.87
COL6A3-204ENST00000392003 OR52K2Q8NGK3 314 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 OR4L1Q8NH43 312 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 MAGEH1Q9H213 219 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 ZNF385DQ9H6B1 395 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 ELAC1Q9H777 363 aaKnown RBP9.62□□□□□ -0.87
COL6A3-204ENST00000392003 CCSER2Q9H7U1 834 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 TMEM39AQ9NV64 488 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 FAM32AQ9Y421 112 aaKnown RBP9.62□□□□□ -0.87
COL6A3-204ENST00000392003 ARIH1Q9Y4X5 557 aaPredicted RBP9.62□□□□□ -0.87
COL6A3-204ENST00000392003 LOC105371267A0A1B0GV96 52 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 CCDC162PA2VCL2 907 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 TRIM38O00635 465 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 TMCC2O75069 709 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 ATXN1LP0C7T5 689 aaKnown RBP9.62□□□□□ -0.87
COL6A3-204ENST00000392003 PIRTP0C851 137 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 GFAPP14136 432 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 RPL17P18621 184 aaKnown RBP9.62□□□□□ -0.87
COL6A3-204ENST00000392003 XRCC1P18887 633 aaPredicted RBP9.62□□□□□ -0.87
COL6A3-204ENST00000392003 OGNP20774 298 aaKnown RBP9.62□□□□□ -0.87
COL6A3-204ENST00000392003 KCNA5P22460 613 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 CES1P23141 567 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 OR1D2P34982 312 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 PSME3P61289 254 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 TNK2Q07912 1038 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 ARTNQ5T4W7 220 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 LRRC43Q8N309 656 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 PGBD5Q8N414 524 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 PIP4K2CQ8TBX8 421 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 C2orf15Q8WU43 125 aaKnown RBP9.62□□□□□ -0.87
COL6A3-204ENST00000392003 ANKRD49Q8WVL7 239 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 TMEM169Q96HH4 297 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 IER2Q9BTL4 223 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 EBF3Q9H4W6 596 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 MEAF6Q9HAF1 191 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 SYTL2Q9HCH5 934 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 CCDC167Q9P0B6 97 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 UBA2Q9UBT2 640 aaPredicted RBP9.62□□□□□ -0.87
COL6A3-204ENST00000392003 PDE4DIPQ5VU43 2346 aa9.62□□□□□ -0.87
COL6A3-204ENST00000392003 PITPNM1O00562 1244 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 PEX1O43933 1283 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 ACSL4O60488 711 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 NDUFS3O75489 264 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 SERPINB7O75635 380 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 RHOBTB1O94844 696 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 GALTP07902 379 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 CCL5P13501 91 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 PORP16435 677 aaPredicted RBP9.61□□□□□ -0.87
COL6A3-204ENST00000392003 MLLT3P42568 568 aaPredicted RBP9.61□□□□□ -0.87
COL6A3-204ENST00000392003 CDKN2DP55273 166 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 GNA12Q03113 381 aa9.61□□□□□ -0.87
COL6A3-204ENST00000392003 MRPL58Q14197 206 aaKnown RBP9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms