RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 DGCR14Q96DF8 476 aaKnown RBP12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 NXF3Q9H4D5 531 aaKnown RBP12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 SLC27A5Q9Y2P5 690 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 SLC15A5A6NIM6 579 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 C22orf31O95567 290 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 GCNT6Q5T4J0 391 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 PIGZQ86VD9 579 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 ABI3Q9P2A4 366 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 UPB1Q9UBR1 384 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 IKZF2Q9UKS7 526 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 CEMIPQ8WUJ3 1361 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 ZNF208O43345 1280 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 TLL1O43897 1013 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 MPZL2O60487 215 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 PGM3O95394 542 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 PARP15Q460N3 678 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 FAM35AQ86V20 835 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 KIAA0319LQ8IZA0 1049 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 LEMD2Q8NC56 503 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 DNASE1L2Q92874 299 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 PLEKHA1Q9HB21 404 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 STOML2Q9UJZ1 356 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 hCG_1818297A0A087WSY0 165 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 A0A1W2PQ67 120 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 TRAFD1O14545 582 aaPredicted RBP12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 PER2O15055 1255 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 CDH3P22223 829 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 AADACL2Q6P093 401 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 TMPRSS11BQ86T26 416 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 TBC1D10AQ9BXI6 508 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 GRIP1Q9Y3R0 1128 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 PAX7P23759 505 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 RPL19P84098 196 aaKnown RBP12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 CRELD2Q6UXH1 353 aaPredicted RBP12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 OR5T3Q8NGG3 340 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 EQTNQ9NQ60 294 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 XPR1Q9UBH6 696 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 VWA7Q9Y334 891 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 TRAF6Q9Y4K3 522 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 AK5Q9Y6K8 562 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 RPP40O75818 363 aaKnown RBP12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 ELP6Q0PNE2 266 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 TTMPQ5BVD1 217 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 ISLR2Q6UXK2 745 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 TMEM192Q8IY95 271 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 C12orf50Q8NA57 414 aaPredicted RBP12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 SRFBP1Q8NEF9 429 aaKnown RBP12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 HM13Q8TCT9 377 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 FAR1Q8WVX9 515 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 RASSF5Q8WWW0 418 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 CHMP1AQ9HD42 196 aaPredicted RBP12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 OAS3Q9Y6K5 1087 aaKnown RBP12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 KIAA1210Q9ULL0 1709 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 CYB5AP00167 134 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 S100A1P23297 94 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 PTPN9P43378 593 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 ATXN1P54253 815 aaKnown RBP12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 BST1Q10588 318 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 XKR4Q5GH76 650 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 CATSPERGQ6ZRH7 1159 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 C1GALT1C1Q96EU7 318 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 IL25Q9H293 177 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 A0A0J9YYE9 177 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 PRMT5O14744 637 aaPredicted RBP12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 METTL18O95568 372 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 CXCL14O95715 111 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 FADS2O95864 444 aaKnown RBP12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 CTBP1Q13363 440 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 AUHQ13825 339 aaKnown RBP12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 MAP1SQ66K74 1059 aaPredicted RBP12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 CXCL17Q6UXB2 119 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 FAM124AQ86V42 546 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 MTMR9Q96QG7 549 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 GLIS2Q9BZE0 524 aaPredicted RBP12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 RPL26L1Q9UNX3 145 aaKnown RBP12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 GMEB1Q9Y692 573 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 DIP2BQ9P265 1576 aa12.75□□□□□ -0.37
CCDC88C-204ENST00000389857 THRBP10828 461 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 HNRNPLP14866 589 aaKnown RBP eCLIP12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 CMPK1P30085 196 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 MAXP61244 160 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 SMAD3P84022 425 aaKnown RBP12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 PPP3CAQ08209 521 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 DLG1Q12959 904 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 FAM81AQ8TBF8 368 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 IDI2Q9BXS1 227 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 TBC1D14Q9P2M4 693 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 COL1A2P08123 1366 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 TLR5O60602 858 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 TSPAN9O75954 239 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 SLC7A2P52569 658 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 PPP3R1P63098 170 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 LCN1P1Q5VSP4 162 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 GPALPP1Q8IXQ4 340 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 RASGEF1AQ8N9B8 481 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 TTC29Q8NA56 475 aaPredicted RBP12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 OR2T12Q8NG77 320 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 VANGL1Q8TAA9 524 aaPredicted RBP12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 PRDM12Q9H4Q4 367 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 LRTM1Q9HBL6 345 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms