RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 OR10H2O60403 315 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 HLA-EP13747 358 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 AP2B1P63010 937 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 ZNF805Q5CZA5 627 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 IRGCQ6NXR0 463 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 RGS9BPQ6ZS82 235 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 CHSY3Q70JA7 882 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 BEND5Q7L4P6 421 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 CYP4X1Q8N118 509 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 LRRC57Q8N9N7 239 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 LMX1AQ8TE12 382 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 TRPC4Q9UBN4 977 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 AIM2O14862 343 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 CXCL10P02778 98 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 ITGA2BP08514 1039 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 THRAP10827 490 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 HGFP14210 728 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 PLK1P53350 603 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 FAM189BP81408 668 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 KDM7AQ6ZMT4 941 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 GPRIN1Q7Z2K8 1008 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 C10orf53Q8N6V4 93 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 TACO1Q9BSH4 297 aaKnown RBP10.12□□□□□ -0.79
USP54-201ENST00000339859 RIOK2Q9BVS4 552 aaKnown RBP10.12□□□□□ -0.79
USP54-201ENST00000339859 PHACTR1Q9C0D0 580 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 ABCG8Q9H221 673 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 THAP1Q9NVV9 213 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 CACNA2D2Q9NY47 1150 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 FKBPLQ9UIM3 349 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 NPEPPSL1A6NEC2 478 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 B4DGG1 531 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 H3BQF6 201 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 SOCS5O75159 536 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 CDH2P19022 906 aaPredicted RBP10.12□□□□□ -0.79
USP54-201ENST00000339859 ATP6V1C1P21283 382 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 DUPD1Q68J44 220 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 KLHDC10Q6PID8 442 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 LRRTM4Q86VH4 590 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 CENPLQ8N0S6 344 aaPredicted RBP10.12□□□□□ -0.79
USP54-201ENST00000339859 AZIN2Q96A70 460 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 CLSTN3Q9BQT9 956 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 LMAN1LQ9HAT1 526 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 NUDT4Q9NZJ9 180 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 ADAM21Q9UKJ8 722 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 PNMA8BQ9ULN7 279 aaPredicted RBP10.12□□□□□ -0.79
USP54-201ENST00000339859 BEST1O76090 585 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 NAA30Q147X3 362 aaPredicted RBP10.12□□□□□ -0.79
USP54-201ENST00000339859 CNGA3Q16281 694 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 DEFB119Q8N690 84 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 IL1RL2Q9HB29 575 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 KLHL3Q9UH77 587 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 DMGDHQ9UI17 866 aaKnown RBP10.12□□□□□ -0.79
USP54-201ENST00000339859 NRXN2Q9P2S2 1712 aa10.12□□□□□ -0.79
USP54-201ENST00000339859 TRBV23OR9-2A0A075B6M9 112 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 ALOX15BO15296 676 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 ESR1P03372 595 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 NFYCQ13952 458 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 ELOCQ15369 112 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 CYP2U1Q7Z449 544 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 SPPL3Q8TCT6 385 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 LDHAL6BQ9BYZ2 381 aaPredicted RBP10.11□□□□□ -0.79
USP54-201ENST00000339859 KLHL28Q9NXS3 571 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 ZDHHC3Q9NYG2 299 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 TRAFD1O14545 582 aaPredicted RBP10.11□□□□□ -0.79
USP54-201ENST00000339859 UQCRBP14927 111 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 NTHL1P78549 312 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 LRRC73Q5JTD7 316 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 PACS1Q6VY07 963 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 CAMK1DQ8IU85 385 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 METTL21AQ8WXB1 218 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 C12orf66Q96MD2 445 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 FEM1AQ9BSK4 669 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 CCDC177Q9NQR7 707 aaPredicted RBP10.11□□□□□ -0.79
USP54-201ENST00000339859 AURKCQ9UQB9 309 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 HCFC2Q9Y5Z7 792 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 J3KR12 359 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 MMP20O60882 483 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 MT-CYBP00156 380 aaPredicted RBP10.11□□□□□ -0.79
USP54-201ENST00000339859 C5AR1P21730 350 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 GTF2E2P29084 291 aaKnown RBP10.11□□□□□ -0.79
USP54-201ENST00000339859 SLC25A11Q02978 314 aaKnown RBP10.11□□□□□ -0.79
USP54-201ENST00000339859 GALNT2Q10471 571 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 TRIM68Q6AZZ1 485 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 KRT80Q6KB66 452 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 KIAA0408Q6ZU52 694 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 GPR65Q8IYL9 337 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 SCML4Q8N228 414 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 TXNDC5Q8NBS9 432 aaKnown RBP10.11□□□□□ -0.79
USP54-201ENST00000339859 ST13P5Q8NFI4 369 aaPredicted RBP10.11□□□□□ -0.79
USP54-201ENST00000339859 CMASQ8NFW8 434 aaPredicted RBP10.11□□□□□ -0.79
USP54-201ENST00000339859 OR2T3Q8NH03 318 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 TCP10LQ8TDR4 215 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 SLC22A18Q96BI1 424 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 CPED1A4D0V7 1026 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 NR5A2O00482 541 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 AVPR1BP47901 424 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 PNLIPRP1P54315 467 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 HIBCHQ6NVY1 386 aaPredicted RBP10.11□□□□□ -0.79
USP54-201ENST00000339859 TTLL2Q9BWV7 592 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 SGK2Q9HBY8 427 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms