RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 VARS2Q5ST30 1063 aaKnown RBP5.23□□□□□ -1.57
SCN1A-201ENST00000303395 OGFRL1Q5TC84 451 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-201ENST00000303395 TMC7Q7Z402 723 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 OR5T3Q8NGG3 340 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 CCDC107Q8WV48 283 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 ZNF599Q96NL3 588 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 BHLHE41Q9C0J9 482 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-201ENST00000303395 STAU2Q9NUL3 570 aaKnown RBP eCLIP5.23□□□□□ -1.57
SCN1A-201ENST00000303395 PCDHGB5Q9Y5G0 923 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 N6AMT1Q9Y5N5 214 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 CCDC195A0A1B0GUA6 201 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 USP17L15C9J2P7 530 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 USP17L13C9JLJ4 530 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 USP17L11C9JVI0 530 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 USP17L18D6R9N7 530 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 USP17L22D6RA61 530 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 USP17L17D6RBQ6 530 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 USP17L19D6RCP7 530 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 USP17L20D6RJB6 530 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 SERPINB7O75635 380 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 RPS5P46782 204 aaKnown RBP5.23□□□□□ -1.57
SCN1A-201ENST00000303395 GYG1P46976 350 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 RGS7P49802 495 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 SLC7A2P52569 658 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 SRP54P61011 504 aaKnown RBP5.23□□□□□ -1.57
SCN1A-201ENST00000303395 RAB10P61026 200 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 USP17L24Q0WX57 530 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 LCP2Q13094 533 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 TCEA2Q15560 299 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 ZNF57Q68EA5 555 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-201ENST00000303395 RPL13AP3Q6NVV1 102 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 FAM196AQ6ZSG2 479 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 PLCZ1Q86YW0 608 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 KDM1BQ8NB78 822 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 RTP4Q96DX8 246 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 FAM86C1Q9NVL1 165 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 MED11Q9P086 117 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 PDE10AQ9Y233 779 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 CLIC2O15247 247 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 PLIN3O60664 434 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 HSMCR30P0CW71 290 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 CSH1P0DML2 217 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 CSH2P0DML3 217 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 DGKAP23743 735 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 MZF1P28698 734 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-201ENST00000303395 RPL9P32969 192 aaKnown RBP5.23□□□□□ -1.57
SCN1A-201ENST00000303395 RPL10AP62906 217 aaKnown RBP5.23□□□□□ -1.57
SCN1A-201ENST00000303395 USP41Q3LFD5 358 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 DUS1LQ6P1R4 473 aaKnown RBP5.23□□□□□ -1.57
SCN1A-201ENST00000303395 C1orf186Q6ZWK4 172 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 SMIM5Q71RC9 77 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 EIF3MQ7L2H7 374 aaKnown RBP5.23□□□□□ -1.57
SCN1A-201ENST00000303395 EMC1Q8N766 993 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 NAT16Q8N8M0 369 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 OR8J3Q8NGG0 315 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 TCEAL3Q969E4 200 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 ANKRD60Q9BZ19 345 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 MLXIPLQ9NP71 852 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 TNRC6CQ9HCJ0 1690 aaKnown RBP5.23□□□□□ -1.57
SCN1A-201ENST00000303395 DPPA5A6NC42 116 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 DNM1LO00429 736 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 SLC7A4O43246 635 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 TPD52L2O43399 206 aaKnown RBP5.23□□□□□ -1.57
SCN1A-201ENST00000303395 ABCB7O75027 752 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 COQ9O75208 318 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 RPLP0P05388 317 aaKnown RBP5.23□□□□□ -1.57
SCN1A-201ENST00000303395 MTHFD1P11586 935 aaKnown RBP5.23□□□□□ -1.57
SCN1A-201ENST00000303395 NR2C1P13056 603 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 KCNA5P22460 613 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 GLRA2P23416 452 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 SLC6A3Q01959 620 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 ZNF211Q13398 564 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-201ENST00000303395 GPAT2Q6NUI2 795 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 PGM2L1Q6PCE3 622 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 TAS1R3Q7RTX0 852 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 RETREG3Q86VR2 466 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 HPS6Q86YV9 775 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 RIOX2Q8IUF8 465 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 NODALQ96S42 347 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 GPR63Q9BZJ6 419 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 SLC6A16Q9GZN6 736 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 ROGDIQ9GZN7 287 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 GPN2Q9H9Y4 310 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-201ENST00000303395 FAM217BQ9NTX9 383 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-201ENST00000303395 DMAC2Q9NW81 257 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 CKLFQ9UBR5 152 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 PRKAG3Q9UGI9 489 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 PEAK1Q9H792 1746 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 NACAE9PAV3 2078 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 A0A1W2PQ72 361 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 MSH4O15457 936 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 EPOP01588 193 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 ATP6V1B1P15313 513 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 PTPN2P17706 415 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 AGTR1P30556 359 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 CDH5P33151 784 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-201ENST00000303395 CTBP2P56545 445 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 YBEYP58557 167 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-201ENST00000303395 DGKDQ16760 1214 aa5.23□□□□□ -1.57
SCN1A-201ENST00000303395 TMPRSS11AQ6ZMR5 421 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms