RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 RBM44Q6ZP01 1051 aaKnown RBP16.57■□□□□ 0.24
VPS54-201ENST00000272322 RALGPS2Q86X27 583 aaPredicted RBP16.57■□□□□ 0.24
VPS54-201ENST00000272322 RAET1EQ8TD07 263 aa16.57■□□□□ 0.24
VPS54-201ENST00000272322 ZNF385DQ9H6B1 395 aa16.57■□□□□ 0.24
VPS54-201ENST00000272322 SCUBE2Q9NQ36 999 aa16.57■□□□□ 0.24
VPS54-201ENST00000272322 AFF4Q9UHB7 1163 aaKnown RBP16.57■□□□□ 0.24
VPS54-201ENST00000272322 EIF2B4Q9UI10 523 aaKnown RBP16.57■□□□□ 0.24
VPS54-201ENST00000272322 HEMK1Q9Y5R4 338 aaPredicted RBP16.57■□□□□ 0.24
VPS54-201ENST00000272322 NYNRINQ9P2P1 1898 aaKnown RBP16.56■□□□□ 0.24
VPS54-201ENST00000272322 MYO9BQ13459 2157 aa16.56■□□□□ 0.24
VPS54-201ENST00000272322 ECI2O75521 394 aa16.56■□□□□ 0.24
VPS54-201ENST00000272322 BCAS2O75934 225 aaPredicted RBP16.56■□□□□ 0.24
VPS54-201ENST00000272322 RHOCP08134 193 aa16.56■□□□□ 0.24
VPS54-201ENST00000272322 MC4RP32245 332 aa16.56■□□□□ 0.24
VPS54-201ENST00000272322 ATP5C1P36542 298 aaKnown RBP16.56■□□□□ 0.24
VPS54-201ENST00000272322 GDF5P43026 501 aa16.56■□□□□ 0.24
VPS54-201ENST00000272322 HERVK_113P63132 956 aa16.56■□□□□ 0.24
VPS54-201ENST00000272322 PPP1R8Q12972 351 aaKnown RBP16.56■□□□□ 0.24
VPS54-201ENST00000272322 KIAA0408Q6ZU52 694 aa16.56■□□□□ 0.24
VPS54-201ENST00000272322 SETD3Q86TU7 594 aaPredicted RBP16.56■□□□□ 0.24
VPS54-201ENST00000272322 CLYBLQ8N0X4 340 aa16.56■□□□□ 0.24
VPS54-201ENST00000272322 C1orf74Q96LT6 269 aa16.56■□□□□ 0.24
VPS54-201ENST00000272322 ERVK-6Q9BXR3 956 aa16.56■□□□□ 0.24
VPS54-201ENST00000272322 RNF38Q9H0F5 515 aa16.56■□□□□ 0.24
VPS54-201ENST00000272322 UBA2Q9UBT2 640 aaPredicted RBP16.56■□□□□ 0.24
VPS54-201ENST00000272322 MROH6A6NGR9 719 aa16.56■□□□□ 0.24
VPS54-201ENST00000272322 FFAR3O14843 346 aa16.56■□□□□ 0.24
VPS54-201ENST00000272322 INPP4BO15327 924 aa16.56■□□□□ 0.24
VPS54-201ENST00000272322 GPR42O15529 346 aa16.56■□□□□ 0.24
VPS54-201ENST00000272322 RPP40O75818 363 aaKnown RBP16.56■□□□□ 0.24
VPS54-201ENST00000272322 CORO1AP31146 461 aaKnown RBP16.56■□□□□ 0.24
VPS54-201ENST00000272322 CLCQ05315 142 aa16.56■□□□□ 0.24
VPS54-201ENST00000272322 IL10RBQ08334 325 aa16.56■□□□□ 0.24
VPS54-201ENST00000272322 ARMC12Q5T9G4 340 aa16.56■□□□□ 0.24
VPS54-201ENST00000272322 UGT2A3Q6UWM9 527 aa16.56■□□□□ 0.24
VPS54-201ENST00000272322 CPSF7Q8N684 471 aaKnown RBP16.56■□□□□ 0.24
VPS54-201ENST00000272322 PCSK9Q8NBP7 692 aaKnown RBP16.56■□□□□ 0.24
VPS54-201ENST00000272322 OR52B6Q8NGF0 335 aa16.56■□□□□ 0.24
VPS54-201ENST00000272322 GABPB2Q8TAK5 448 aaPredicted RBP16.56■□□□□ 0.24
VPS54-201ENST00000272322 TMEM79Q9BSE2 394 aa16.56■□□□□ 0.24
VPS54-201ENST00000272322 VNN2O95498 520 aa16.55■□□□□ 0.24
VPS54-201ENST00000272322 PCNAP12004 261 aa16.55■□□□□ 0.24
VPS54-201ENST00000272322 MZF1P28698 734 aaPredicted RBP16.55■□□□□ 0.24
VPS54-201ENST00000272322 ZNF33AQ06730 810 aa16.55■□□□□ 0.24
VPS54-201ENST00000272322 LRP8Q14114 963 aa16.55■□□□□ 0.24
VPS54-201ENST00000272322 SQLEQ14534 574 aa16.55■□□□□ 0.24
VPS54-201ENST00000272322 CMPK2Q5EBM0 449 aa16.55■□□□□ 0.24
VPS54-201ENST00000272322 FAM45BPQ6NSW5 357 aa16.55■□□□□ 0.24
VPS54-201ENST00000272322 FAM45AQ8TCE6 357 aa16.55■□□□□ 0.24
VPS54-201ENST00000272322 BRSK1Q8TDC3 778 aa16.55■□□□□ 0.24
VPS54-201ENST00000272322 PTCD2Q8WV60 388 aaKnown RBP16.55■□□□□ 0.24
VPS54-201ENST00000272322 UROC1Q96N76 676 aa16.55■□□□□ 0.24
VPS54-201ENST00000272322 SPATA16Q9BXB7 569 aa16.55■□□□□ 0.24
VPS54-201ENST00000272322 RNF103-CHMP3A0A140T963 221 aa16.55■□□□□ 0.24
VPS54-201ENST00000272322 GIPC1O14908 333 aa16.55■□□□□ 0.24
VPS54-201ENST00000272322 STX7O15400 261 aaKnown RBP16.55■□□□□ 0.24
VPS54-201ENST00000272322 OR4F21O95013 312 aa16.55■□□□□ 0.24
VPS54-201ENST00000272322 ATP6V1B2P21281 511 aa16.55■□□□□ 0.24
VPS54-201ENST00000272322 KRT80Q6KB66 452 aa16.55■□□□□ 0.24
VPS54-201ENST00000272322 DHFR2Q86XF0 187 aa16.55■□□□□ 0.24
VPS54-201ENST00000272322 SLC22A9Q8IVM8 553 aa16.55■□□□□ 0.24
VPS54-201ENST00000272322 PELI3Q8N2H9 469 aa16.55■□□□□ 0.24
VPS54-201ENST00000272322 MTFMTQ96DP5 389 aaKnown RBP16.55■□□□□ 0.24
VPS54-201ENST00000272322 HGH1Q9BTY7 390 aa16.55■□□□□ 0.24
VPS54-201ENST00000272322 C6orf203Q9P0P8 240 aaPredicted RBP16.55■□□□□ 0.24
VPS54-201ENST00000272322 RAI2Q9Y5P3 530 aa16.55■□□□□ 0.24
VPS54-201ENST00000272322 KRT87PA6NCN2 255 aa16.55■□□□□ 0.24
VPS54-201ENST00000272322 H0Y626 953 aa16.55■□□□□ 0.24
VPS54-201ENST00000272322 PRAMEF11O60813 436 aa16.55■□□□□ 0.24
VPS54-201ENST00000272322 NBNO60934 754 aa16.55■□□□□ 0.24
VPS54-201ENST00000272322 TRIM16O95361 564 aa16.55■□□□□ 0.24
VPS54-201ENST00000272322 FRG1Q14331 258 aaKnown RBP16.55■□□□□ 0.24
VPS54-201ENST00000272322 SLC5A9Q2M3M2 681 aa16.55■□□□□ 0.24
VPS54-201ENST00000272322 TRIM71Q2Q1W2 868 aaKnown RBP16.55■□□□□ 0.24
VPS54-201ENST00000272322 FAM151BQ6UXP7 276 aa16.55■□□□□ 0.24
VPS54-201ENST00000272322 ZBTB49Q6ZSB9 765 aa16.55■□□□□ 0.24
VPS54-201ENST00000272322 LARP4Q71RC2 724 aaKnown RBP eCLIP16.55■□□□□ 0.245e-6■■■■□ 23.6
VPS54-201ENST00000272322 SLC22A12Q96S37 553 aa16.55■□□□□ 0.24
VPS54-201ENST00000272322 UNC93B1Q9H1C4 597 aa16.55■□□□□ 0.24
VPS54-201ENST00000272322 MEAF6Q9HAF1 191 aa16.55■□□□□ 0.24
VPS54-201ENST00000272322 ARNT2Q9HBZ2 717 aa16.55■□□□□ 0.24
VPS54-201ENST00000272322 TAS2R13Q9NYV9 303 aa16.55■□□□□ 0.24
VPS54-201ENST00000272322 AGO1Q9UL18 857 aaKnown RBP16.55■□□□□ 0.24
VPS54-201ENST00000272322 TDRD15B5MCY1 1934 aaKnown RBP16.54■□□□□ 0.24
VPS54-201ENST00000272322 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.54■□□□□ 0.24
VPS54-201ENST00000272322 LOC285095A0A1B0GVY8 99 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 ARHGEF37A1IGU5 675 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 UNCXA6NJT0 531 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 STAMBPO95630 424 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 CNPP09543 421 aaKnown RBP16.54■□□□□ 0.24
VPS54-201ENST00000272322 UGT1A1P22309 533 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 UGT1A4P22310 534 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 HOXD9P28356 352 aaPredicted RBP16.54■□□□□ 0.24
VPS54-201ENST00000272322 UGT1A3P35503 534 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 UGT1A5P35504 534 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 MAPK10P53779 464 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 UFM1P61960 85 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 MYBPC1Q00872 1141 aa16.54■□□□□ 0.24
VPS54-201ENST00000272322 NRG1Q02297 640 aaPredicted RBP16.54■□□□□ 0.24
VPS54-201ENST00000272322 ZNF177Q13360 481 aaPredicted RBP16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms