RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 RPL5P46777 297 aaKnown RBP19.09■□□□□ 0.65
UPF1-201ENST00000262803 ABRQ12979 859 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 KCTD21Q4G0X4 260 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 TBC1D3GQ6DHY5 549 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 TBC1D3CQ6IPX1 549 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 XYLT1Q86Y38 959 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 TBC1D3Q8IZP1 549 aaPredicted RBP19.09■□□□□ 0.65
UPF1-201ENST00000262803 GSTCDQ8NEC7 633 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 RASSF5Q8WWW0 418 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 SMG7Q92540 1137 aaKnown RBP19.09■□□□□ 0.65
UPF1-201ENST00000262803 AP2M1Q96CW1 435 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 BPIFA1Q9NP55 256 aa19.09■□□□□ 0.65
UPF1-201ENST00000262803 CMPK1P30085 196 aa19.08■□□□□ 0.65
UPF1-201ENST00000262803 NR1H2P55055 460 aa19.08■□□□□ 0.65
UPF1-201ENST00000262803 XKR4Q5GH76 650 aa19.08■□□□□ 0.65
UPF1-201ENST00000262803 FBXO42Q6P3S6 717 aa19.08■□□□□ 0.65
UPF1-201ENST00000262803 KLHL17Q6TDP4 642 aa19.08■□□□□ 0.65
UPF1-201ENST00000262803 PTF1AQ7RTS3 328 aa19.08■□□□□ 0.65
UPF1-201ENST00000262803 STYXQ8WUJ0 223 aa19.08■□□□□ 0.65
UPF1-201ENST00000262803 CLCC1Q96S66 551 aa19.08■□□□□ 0.65
UPF1-201ENST00000262803 HSD3B7Q9H2F3 369 aa19.08■□□□□ 0.65
UPF1-201ENST00000262803 ZFP14Q9HCL3 533 aa19.08■□□□□ 0.65
UPF1-201ENST00000262803 FAM86C2PA6NEL3 165 aa19.08■□□□□ 0.65
UPF1-201ENST00000262803 CST3P01034 146 aaPredicted RBP19.08■□□□□ 0.65
UPF1-201ENST00000262803 VARSP26640 1264 aaKnown RBP19.08■□□□□ 0.65
UPF1-201ENST00000262803 AMIGO2Q86SJ2 522 aa19.08■□□□□ 0.65
UPF1-201ENST00000262803 AHI1Q8N157 1196 aa19.08■□□□□ 0.65
UPF1-201ENST00000262803 SFRP1Q8N474 314 aa19.08■□□□□ 0.65
UPF1-201ENST00000262803 FAM13CQ8NE31 585 aa19.08■□□□□ 0.65
UPF1-201ENST00000262803 ST6GALNAC4Q9H4F1 302 aa19.08■□□□□ 0.65
UPF1-201ENST00000262803 CMTM6Q9NX76 183 aa19.08■□□□□ 0.65
UPF1-201ENST00000262803 PTGFRNQ9P2B2 879 aa19.08■□□□□ 0.65
UPF1-201ENST00000262803 ATXN2Q99700 1313 aaKnown RBP19.08■□□□□ 0.64
UPF1-201ENST00000262803 NDST3O95803 873 aa19.08■□□□□ 0.64
UPF1-201ENST00000262803 ALOX12P18054 663 aa19.08■□□□□ 0.64
UPF1-201ENST00000262803 CCNCP24863 283 aa19.08■□□□□ 0.64
UPF1-201ENST00000262803 IDH2P48735 452 aaKnown RBP19.08■□□□□ 0.64
UPF1-201ENST00000262803 RHAGQ02094 409 aa19.08■□□□□ 0.64
UPF1-201ENST00000262803 KLHL12Q53G59 568 aa19.08■□□□□ 0.64
UPF1-201ENST00000262803 FAM171BQ6P995 826 aa19.08■□□□□ 0.64
UPF1-201ENST00000262803 SPESP1Q6UW49 350 aa19.08■□□□□ 0.64
UPF1-201ENST00000262803 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP19.08■□□□□ 0.643e-7■■■■■ 232.1
UPF1-201ENST00000262803 CPT1BQ92523 772 aa19.08■□□□□ 0.64
UPF1-201ENST00000262803 CSPG4P5Q96PW8 444 aa19.08■□□□□ 0.64
UPF1-201ENST00000262803 NMUR2Q9GZQ4 415 aa19.08■□□□□ 0.64
UPF1-201ENST00000262803 MAGEH1Q9H213 219 aa19.08■□□□□ 0.64
UPF1-201ENST00000262803 DHX33Q9H6R0 707 aaKnown RBP19.08■□□□□ 0.64
UPF1-201ENST00000262803 PCDH12Q9NPG4 1184 aa19.08■□□□□ 0.64
UPF1-201ENST00000262803 CHKBQ9Y259 395 aa19.08■□□□□ 0.64
UPF1-201ENST00000262803 SCAMP3O14828 347 aaKnown RBP19.08■□□□□ 0.64
UPF1-201ENST00000262803 MAGEB3O15480 346 aa19.08■□□□□ 0.64
UPF1-201ENST00000262803 VIPP01282 170 aa19.08■□□□□ 0.64
UPF1-201ENST00000262803 C2P06681 752 aa19.08■□□□□ 0.64
UPF1-201ENST00000262803 SSR2P43308 183 aa19.08■□□□□ 0.64
UPF1-201ENST00000262803 FLT3LGP49771 235 aa19.08■□□□□ 0.64
UPF1-201ENST00000262803 CERCAMQ5T4B2 595 aa19.08■□□□□ 0.64
UPF1-201ENST00000262803 GCNT7Q6ZNI0 430 aa19.08■□□□□ 0.64
UPF1-201ENST00000262803 RINLQ6ZS11 566 aa19.08■□□□□ 0.64
UPF1-201ENST00000262803 NPAS4Q8IUM7 802 aa19.08■□□□□ 0.64
UPF1-201ENST00000262803 MCEMP1Q8IX19 187 aa19.08■□□□□ 0.64
UPF1-201ENST00000262803 RAB11FIP5Q9BXF6 653 aa19.08■□□□□ 0.64
UPF1-201ENST00000262803 EOMESO95936 686 aa19.07■□□□□ 0.64
UPF1-201ENST00000262803 ASLP04424 464 aa19.07■□□□□ 0.64
UPF1-201ENST00000262803 BUD31P41223 144 aaPredicted RBP19.07■□□□□ 0.64
UPF1-201ENST00000262803 CDKN2BP42772 138 aa19.07■□□□□ 0.64
UPF1-201ENST00000262803 BCAP31P51572 246 aa19.07■□□□□ 0.64
UPF1-201ENST00000262803 LEMD2Q8NC56 503 aa19.07■□□□□ 0.64
UPF1-201ENST00000262803 OR4A15Q8NGL6 344 aa19.07■□□□□ 0.64
UPF1-201ENST00000262803 NXF3Q9H4D5 531 aaKnown RBP19.07■□□□□ 0.64
UPF1-201ENST00000262803 PCDHB9Q9Y5E1 797 aa19.07■□□□□ 0.64
UPF1-201ENST00000262803 CLDN4O14493 209 aa19.07■□□□□ 0.64
UPF1-201ENST00000262803 OLR1P78380 273 aa19.07■□□□□ 0.64
UPF1-201ENST00000262803 HSDL1Q3SXM5 330 aa19.07■□□□□ 0.64
UPF1-201ENST00000262803 BPIFB6Q8NFQ5 453 aa19.07■□□□□ 0.64
UPF1-201ENST00000262803 ACBD6Q9BR61 282 aa19.07■□□□□ 0.64
UPF1-201ENST00000262803 RSPH9Q9H1X1 276 aaPredicted RBP19.07■□□□□ 0.64
UPF1-201ENST00000262803 CPTPQ5TA50 214 aa19.07■□□□□ 0.64
UPF1-201ENST00000262803 ECHDC2Q86YB7 292 aa19.07■□□□□ 0.64
UPF1-201ENST00000262803 PRRG4Q9BZD6 226 aa19.07■□□□□ 0.64
UPF1-201ENST00000262803 SLC27A5Q9Y2P5 690 aa19.07■□□□□ 0.64
UPF1-201ENST00000262803 IRAK3Q9Y616 596 aa19.07■□□□□ 0.64
UPF1-201ENST00000262803 NEDD8-MDP1E9PL57 170 aa19.07■□□□□ 0.64
UPF1-201ENST00000262803 GSC2O15499 205 aa19.07■□□□□ 0.64
UPF1-201ENST00000262803 CILPO75339 1184 aa19.07■□□□□ 0.64
UPF1-201ENST00000262803 WFS1O76024 890 aa19.07■□□□□ 0.64
UPF1-201ENST00000262803 CDH13P55290 713 aa19.07■□□□□ 0.64
UPF1-201ENST00000262803 USP46P62068 366 aa19.07■□□□□ 0.64
UPF1-201ENST00000262803 ZBTB2Q8N680 514 aa19.07■□□□□ 0.64
UPF1-201ENST00000262803 C12orf50Q8NA57 414 aaPredicted RBP19.07■□□□□ 0.64
UPF1-201ENST00000262803 EXOC2Q96KP1 924 aa19.07■□□□□ 0.64
UPF1-201ENST00000262803 CRHR1P34998 444 aa19.06■□□□□ 0.64
UPF1-201ENST00000262803 ADRA1BP35368 520 aa19.06■□□□□ 0.64
UPF1-201ENST00000262803 GBE1Q04446 702 aa19.06■□□□□ 0.64
UPF1-201ENST00000262803 CHST15Q7LFX5 561 aaPredicted RBP19.06■□□□□ 0.64
UPF1-201ENST00000262803 PRICKLE1Q96MT3 831 aaPredicted RBP19.06■□□□□ 0.64
UPF1-201ENST00000262803 CCDC28BQ9BUN5 200 aa19.06■□□□□ 0.64
UPF1-201ENST00000262803 SLIT3O75094 1523 aa19.06■□□□□ 0.64
UPF1-201ENST00000262803 SLC28A2O43868 658 aa19.06■□□□□ 0.64
UPF1-201ENST00000262803 SLC22A3O75751 556 aa19.06■□□□□ 0.64
UPF1-201ENST00000262803 FAM155BO75949 473 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms