RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 ELMO1Q92556 727 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 BPGMP07738 259 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 ALDH4A1P30038 563 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 CXCR3P49682 368 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 SMAD3P84022 425 aaKnown RBP4.3□□□□□ -1.72
VPS13C-202ENST00000261517 GRSF1Q12849 480 aaKnown RBP eCLIP4.3□□□□□ -1.72
VPS13C-202ENST00000261517 IL18R1Q13478 541 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 LACTB2Q53H82 288 aaPredicted RBP4.3□□□□□ -1.72
VPS13C-202ENST00000261517 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP4.3□□□□□ -1.72
VPS13C-202ENST00000261517 CENPIQ92674 756 aaPredicted RBP4.3□□□□□ -1.72
VPS13C-202ENST00000261517 FCRL2Q96LA5 508 aaPredicted RBP4.3□□□□□ -1.72
VPS13C-202ENST00000261517 EHD1Q9H4M9 534 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 WDR70Q9NW82 654 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 CKLFQ9UBR5 152 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 GLYATL1P3A0A0U1RQE8 302 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 FAM25AB3EWG3 89 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 FAM25CB3EWG5 89 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 FAM25GB3EWG6 89 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 TLX3O43711 291 aaPredicted RBP4.3□□□□□ -1.72
VPS13C-202ENST00000261517 SHOX2O60902 331 aaPredicted RBP4.3□□□□□ -1.72
VPS13C-202ENST00000261517 ITIH1P19827 911 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 GPR180Q86V85 440 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 COLGALT2Q8IYK4 626 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 ZNF276Q8N554 614 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 C9orf43Q8TAL5 461 aaPredicted RBP4.3□□□□□ -1.72
VPS13C-202ENST00000261517 ATG4AQ8WYN0 398 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 ACOX2Q99424 681 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 LDHAL6BQ9BYZ2 381 aaPredicted RBP4.3□□□□□ -1.72
VPS13C-202ENST00000261517 FHDC1Q9C0D6 1143 aaPredicted RBP4.3□□□□□ -1.72
VPS13C-202ENST00000261517 TTYH3Q9C0H2 523 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 WDR6Q9NNW5 1121 aaKnown RBP4.3□□□□□ -1.72
VPS13C-202ENST00000261517 IRAK3Q9Y616 596 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 EVPLQ92817 2033 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 C2CD4BA6NLJ0 364 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 KCNU1A8MYU2 1149 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 CLOCKO15516 846 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 CLDN9O95484 217 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 BMP7P18075 431 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 RBL1P28749 1068 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 WNT3AP56704 352 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 CPTPQ5TA50 214 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 SNX20Q7Z614 316 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 TMEM110Q86TL2 294 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 TRAPPC5Q8IUR0 188 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 LRRC57Q8N9N7 239 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 HIPK4Q8NE63 616 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 KCNN2Q9H2S1 579 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 GLI3P10071 1580 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 C1orf232A0A0U1RR37 186 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 OR2AG2A6NM03 316 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 OR5K4A6NMS3 321 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 SUV39H1O43463 412 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 CCDC159P0C7I6 412 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 PROZP22891 400 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 AUHQ13825 339 aaKnown RBP4.3□□□□□ -1.72
VPS13C-202ENST00000261517 HEPACAMQ14CZ8 416 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 ARSHQ5FYA8 562 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 OAFQ86UD1 273 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 KIAA0319LQ8IZA0 1049 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 HAVCR1Q96D42 359 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 CYP2S1Q96SQ9 504 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 MFSD1Q9H3U5 465 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 ZNF282Q9UDV7 671 aaPredicted RBP4.3□□□□□ -1.72
VPS13C-202ENST00000261517 COMMD3-BMI1R4GMX3 469 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 DDX60LQ5H9U9 1706 aaKnown RBP4.3□□□□□ -1.72
VPS13C-202ENST00000261517 EDDM13A0A1B0GTR0 161 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 GRXCR2A6NFK2 248 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 E9PAM4 449 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 DNM1LO00429 736 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 KPNA3O00505 521 aaPredicted RBP4.3□□□□□ -1.72
VPS13C-202ENST00000261517 PITPNM1O00562 1244 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 STK16O75716 305 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 APBB3O95704 486 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 PEX19P40855 299 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 LLGL1Q15334 1064 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 NDUFA5Q16718 116 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 EOGTQ5NDL2 527 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 TEX47Q8TBZ9 253 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 PPCDCQ96CD2 204 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 RNFT2Q96EX2 444 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 TEKT5Q96M29 485 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 YIPF2Q9BWQ6 316 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 PLK2Q9NYY3 685 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 MARCOQ9UEW3 520 aaPredicted RBP4.3□□□□□ -1.72
VPS13C-202ENST00000261517 ARVCFO00192 962 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 AP3D1O14617 1153 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 KHKP50053 298 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 CHN2P52757 468 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 FBXO43Q4G163 708 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 KSR1Q8IVT5 923 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 NRSN1Q8IZ57 195 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 ZNF786Q8N393 782 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 CELF5Q8N6W0 485 aaKnown RBP4.3□□□□□ -1.72
VPS13C-202ENST00000261517 SCAIQ8N9R8 606 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 HEPHQ9BQS7 1158 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 BBS2Q9BXC9 721 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 ZIM2Q9NZV7 527 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 TRPC4Q9UBN4 977 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 PAPPAQ13219 1627 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 PHGDHO43175 533 aaKnown RBP4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms