RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 TAS2R13Q9NYV9 303 aa16.36■□□□□ 0.21
HOXD3-201ENST00000249440 GBF1Q92538 1859 aa16.36■□□□□ 0.21
HOXD3-201ENST00000249440 UBA6A0AVT1 1052 aaPredicted RBP16.36■□□□□ 0.21
HOXD3-201ENST00000249440 MOXD2PA6NHM9 499 aa16.36■□□□□ 0.21
HOXD3-201ENST00000249440 ZNF839A8K0R7 811 aa16.36■□□□□ 0.21
HOXD3-201ENST00000249440 AKAP10O43572 662 aa16.36■□□□□ 0.21
HOXD3-201ENST00000249440 VPS4BO75351 444 aa16.36■□□□□ 0.21
HOXD3-201ENST00000249440 NDST3O95803 873 aa16.36■□□□□ 0.21
HOXD3-201ENST00000249440 PIRTP0C851 137 aa16.36■□□□□ 0.21
HOXD3-201ENST00000249440 BMP2P12643 396 aa16.36■□□□□ 0.21
HOXD3-201ENST00000249440 ATP6V0D1P61421 351 aa16.36■□□□□ 0.21
HOXD3-201ENST00000249440 CLCQ05315 142 aa16.36■□□□□ 0.21
HOXD3-201ENST00000249440 LCP2Q13094 533 aa16.36■□□□□ 0.21
HOXD3-201ENST00000249440 PITRM1Q5JRX3 1037 aa16.36■□□□□ 0.21
HOXD3-201ENST00000249440 CLLU1OSQ5K130 101 aa16.36■□□□□ 0.21
HOXD3-201ENST00000249440 HMBOX1Q6NT76 420 aa16.36■□□□□ 0.21
HOXD3-201ENST00000249440 TTC9BQ8N6N2 239 aa16.36■□□□□ 0.21
HOXD3-201ENST00000249440 ANKFN1Q8N957 763 aa16.36■□□□□ 0.21
HOXD3-201ENST00000249440 MPP4Q96JB8 637 aa16.36■□□□□ 0.21
HOXD3-201ENST00000249440 NSUN5Q96P11 429 aaKnown RBP16.36■□□□□ 0.21
HOXD3-201ENST00000249440 CYP2S1Q96SQ9 504 aa16.36■□□□□ 0.21
HOXD3-201ENST00000249440 SLC29A1Q99808 456 aa16.36■□□□□ 0.21
HOXD3-201ENST00000249440 TMEM79Q9BSE2 394 aa16.36■□□□□ 0.21
HOXD3-201ENST00000249440 DERL2Q9GZP9 239 aa16.36■□□□□ 0.21
HOXD3-201ENST00000249440 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.36■□□□□ 0.21
HOXD3-201ENST00000249440 RBM38Q9H0Z9 239 aaKnown RBP16.36■□□□□ 0.21
HOXD3-201ENST00000249440 SDR39U1Q9NRG7 319 aaPredicted RBP16.36■□□□□ 0.21
HOXD3-201ENST00000249440 RNF112Q9ULX5 631 aa16.36■□□□□ 0.21
HOXD3-201ENST00000249440 PTGDR2Q9Y5Y4 395 aa16.36■□□□□ 0.21
HOXD3-201ENST00000249440 VWA8A3KMH1 1905 aa16.36■□□□□ 0.21
HOXD3-201ENST00000249440 MYOCOSA0A1B0GUC4 107 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 LRRC14BA6NHZ5 514 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 AQP12BA6NM10 295 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 NME4O00746 187 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 RHOBTB1O94844 696 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 HGFP14210 728 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 IDO1P14902 403 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 GRB7Q14451 532 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 CYTH1Q15438 398 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 MYLK3Q32MK0 819 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 COQ5Q5HYK3 327 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 ALG1LQ6GMV1 187 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 KRT80Q6KB66 452 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 BORAQ6PGQ7 559 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 RTN4RL1Q86UN2 441 aaPredicted RBP16.35■□□□□ 0.21
HOXD3-201ENST00000249440 CARM1Q86X55 608 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 AQP12AQ8IXF9 295 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 MYO1HQ8N1T3 1032 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 FBXO39Q8N4B4 442 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 IL1RL2Q9HB29 575 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 PDFQ9HBH1 243 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 CCM2LQ9NUG4 571 aaPredicted RBP16.35■□□□□ 0.21
HOXD3-201ENST00000249440 THEGQ9P2T0 379 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 CHD5Q8TDI0 1954 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 GREB1Q4ZG55 1949 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 FRMPD3Q5JV73 1810 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 SUPT3HB4E1H0 165 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 HNRNPRO43390 633 aaKnown RBP16.35■□□□□ 0.21
HOXD3-201ENST00000249440 SUPT3HO75486 399 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 TIPRLO75663 272 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 HSD17B1P14061 328 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 CAPN3P20807 821 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 TACR2P21452 398 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 EEF1DP29692 281 aaKnown RBP16.35■□□□□ 0.21
HOXD3-201ENST00000249440 KPNA1P52294 538 aaPredicted RBP16.35■□□□□ 0.21
HOXD3-201ENST00000249440 RAD51Q06609 339 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 BNIP2Q12982 314 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 TRIM71Q2Q1W2 868 aaKnown RBP16.35■□□□□ 0.21
HOXD3-201ENST00000249440 PPP4R4Q6NUP7 873 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 ERMP1Q7Z2K6 904 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 SLC15A3Q8IY34 581 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 ALDH16A1Q8IZ83 802 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 TSPAN14Q8NG11 270 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 LRCH3Q96II8 777 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 KCNA7Q96RP8 456 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 TUBB1Q9H4B7 451 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 NLE1Q9NVX2 485 aaPredicted RBP16.35■□□□□ 0.21
HOXD3-201ENST00000249440 GIMAP2Q9UG22 337 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 POLG2Q9UHN1 485 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 FAM50BQ9Y247 325 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 RNF11Q9Y3C5 154 aa16.35■□□□□ 0.21
HOXD3-201ENST00000249440 LCHNA4D1U4 455 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 SYCE1LA8MT33 242 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 F5H5T6 163 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 CRCPO75575 148 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 SOAT2O75908 522 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 H6PDO95479 791 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 LINC00032P0C843 101 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 ATP6V1B2P21281 511 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 NAA20P61599 178 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 INPP5AQ14642 412 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 ANKS6Q68DC2 871 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 NADSYN1Q6IA69 706 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 PAQR3Q6TCH7 311 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 GOLM1Q8NBJ4 401 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 KLHDC9Q8NEP7 349 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 DTNBP1Q96EV8 351 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 MYEOVQ96EZ4 313 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 HIC2Q96JB3 615 aa16.34■□□□□ 0.21
HOXD3-201ENST00000249440 TRIB3Q96RU7 358 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms