RNA–Protein interactions for RNA: ENST00000637450.1

CLN6-220, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 3

Gene CLN6, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-220ENST00000637450 SOD1P00441 154 aa18.4■□□□□ 0.54
CLN6-220ENST00000637450 CES1P23141 567 aa18.4■□□□□ 0.54
CLN6-220ENST00000637450 GARSP41250 739 aaKnown RBP18.4■□□□□ 0.54
CLN6-220ENST00000637450 GPR1P46091 355 aa18.4■□□□□ 0.54
CLN6-220ENST00000637450 ITKQ08881 620 aa18.4■□□□□ 0.54
CLN6-220ENST00000637450 GALNT2Q10471 571 aa18.4■□□□□ 0.54
CLN6-220ENST00000637450 PEX6Q13608 980 aa18.4■□□□□ 0.54
CLN6-220ENST00000637450 IHHQ14623 411 aa18.4■□□□□ 0.54
CLN6-220ENST00000637450 PAFAH1B3Q15102 231 aaKnown RBP18.4■□□□□ 0.54
CLN6-220ENST00000637450 HADHQ16836 314 aaKnown RBP18.4■□□□□ 0.54
CLN6-220ENST00000637450 CCDC122Q5T0U0 273 aa18.4■□□□□ 0.54
CLN6-220ENST00000637450 PHF19Q5T6S3 580 aa18.4■□□□□ 0.54
CLN6-220ENST00000637450 LRRC66Q68CR7 880 aa18.4■□□□□ 0.54
CLN6-220ENST00000637450 ALG1LQ6GMV1 187 aa18.4■□□□□ 0.54
CLN6-220ENST00000637450 ALKBH5Q6P6C2 394 aaKnown RBP18.4■□□□□ 0.54
CLN6-220ENST00000637450 SLC30A9Q6PML9 568 aa18.4■□□□□ 0.54
CLN6-220ENST00000637450 ADAMTSL4Q6UY14 1074 aa18.4■□□□□ 0.54
CLN6-220ENST00000637450 ZNF574Q6ZN55 896 aaPredicted RBP18.4■□□□□ 0.54
CLN6-220ENST00000637450 USP53Q70EK8 1073 aa18.4■□□□□ 0.54
CLN6-220ENST00000637450 NAGSQ8N159 534 aa18.4■□□□□ 0.54
CLN6-220ENST00000637450 CPLX3Q8WVH0 158 aa18.4■□□□□ 0.54
CLN6-220ENST00000637450 MAML1Q92585 1016 aa18.4■□□□□ 0.54
CLN6-220ENST00000637450 USP7Q93009 1102 aa18.4■□□□□ 0.54
CLN6-220ENST00000637450 MED8Q96G25 268 aa18.4■□□□□ 0.54
CLN6-220ENST00000637450 SMIM14Q96QK8 99 aa18.4■□□□□ 0.54
CLN6-220ENST00000637450 B3GNT4Q9C0J1 378 aa18.4■□□□□ 0.54
CLN6-220ENST00000637450 CBX8Q9HC52 389 aa18.4■□□□□ 0.54
CLN6-220ENST00000637450 WDR70Q9NW82 654 aa18.4■□□□□ 0.54
CLN6-220ENST00000637450 CD84Q9UIB8 345 aa18.4■□□□□ 0.54
CLN6-220ENST00000637450 ARHGEF17Q96PE2 2063 aaPredicted RBP18.39■□□□□ 0.53
CLN6-220ENST00000637450 A0A0J9YYE9 177 aa18.39■□□□□ 0.53
CLN6-220ENST00000637450 C9orf172C9J069 976 aa18.39■□□□□ 0.53
CLN6-220ENST00000637450 MATN3O15232 486 aa18.39■□□□□ 0.53
CLN6-220ENST00000637450 MFSD11O43934 449 aa18.39■□□□□ 0.53
CLN6-220ENST00000637450 TRBC1P01850 177 aa18.39■□□□□ 0.53
CLN6-220ENST00000637450 ZNF30P17039 623 aa18.39■□□□□ 0.53
CLN6-220ENST00000637450 CD1CP29017 333 aa18.39■□□□□ 0.53
CLN6-220ENST00000637450 SSR1P43307 286 aaKnown RBP18.39■□□□□ 0.53
CLN6-220ENST00000637450 GPR3P46089 330 aa18.39■□□□□ 0.53
CLN6-220ENST00000637450 MAPK10P53779 464 aa18.39■□□□□ 0.53
CLN6-220ENST00000637450 UBASH3AP57075 661 aa18.39■□□□□ 0.53
CLN6-220ENST00000637450 SRSF6Q13247 344 aaKnown RBP18.39■□□□□ 0.53
CLN6-220ENST00000637450 DPYSL3Q14195 570 aa18.39■□□□□ 0.53
CLN6-220ENST00000637450 C16orf72Q14CZ0 275 aa18.39■□□□□ 0.53
CLN6-220ENST00000637450 NFKBIBQ15653 356 aa18.39■□□□□ 0.53
CLN6-220ENST00000637450 MAP9Q49MG5 647 aa18.39■□□□□ 0.53
CLN6-220ENST00000637450 ATP13A4Q4VNC1 1196 aa18.39■□□□□ 0.53
CLN6-220ENST00000637450 NCBP2-AS2Q69YL0 99 aa18.39■□□□□ 0.53
CLN6-220ENST00000637450 ZFAND4Q86XD8 727 aa18.39■□□□□ 0.53
CLN6-220ENST00000637450 PATE1Q8WXA2 126 aa18.39■□□□□ 0.53
CLN6-220ENST00000637450 SCAMP4Q969E2 229 aa18.39■□□□□ 0.53
CLN6-220ENST00000637450 FATE1Q969F0 183 aa18.39■□□□□ 0.53
CLN6-220ENST00000637450 AP2M1Q96CW1 435 aa18.39■□□□□ 0.53
CLN6-220ENST00000637450 IQCDQ96DY2 449 aa18.39■□□□□ 0.53
CLN6-220ENST00000637450 NUDT22Q9BRQ3 303 aa18.39■□□□□ 0.53
CLN6-220ENST00000637450 FOXJ2Q9P0K8 574 aa18.39■□□□□ 0.53
CLN6-220ENST00000637450 SEPT10Q9P0V9 454 aa18.39■□□□□ 0.53
CLN6-220ENST00000637450 TMEM98Q9Y2Y6 226 aa18.39■□□□□ 0.53
CLN6-220ENST00000637450 PLEKHM1Q9Y4G2 1056 aa18.39■□□□□ 0.53
CLN6-220ENST00000637450 SETXQ7Z333 2677 aaKnown RBP18.38■□□□□ 0.53
CLN6-220ENST00000637450 B8ZZF3 427 aa18.38■□□□□ 0.53
CLN6-220ENST00000637450 PPM1DO15297 605 aa18.38■□□□□ 0.53
CLN6-220ENST00000637450 CCNCP24863 283 aa18.38■□□□□ 0.53
CLN6-220ENST00000637450 SQSTM1Q13501 440 aa18.38■□□□□ 0.53
CLN6-220ENST00000637450 ANKRD20A8PQ5CZ79 823 aa18.38■□□□□ 0.53
CLN6-220ENST00000637450 TIGD7Q6NT04 549 aaPredicted RBP18.38■□□□□ 0.53
CLN6-220ENST00000637450 DOK6Q6PKX4 331 aa18.38■□□□□ 0.53
CLN6-220ENST00000637450 ZNF765Q7L2R6 523 aa18.38■□□□□ 0.53
CLN6-220ENST00000637450 LUZP1Q86V48 1076 aa18.38■□□□□ 0.53
CLN6-220ENST00000637450 DTX1Q86Y01 620 aa18.38■□□□□ 0.53
CLN6-220ENST00000637450 SGF29Q96ES7 293 aa18.38■□□□□ 0.53
CLN6-220ENST00000637450 TSGA13Q96PP4 275 aa18.38■□□□□ 0.53
CLN6-220ENST00000637450 AGAP2Q99490 1192 aa18.38■□□□□ 0.53
CLN6-220ENST00000637450 CDH19Q9H159 772 aa18.38■□□□□ 0.53
CLN6-220ENST00000637450 RBM22Q9NW64 420 aaKnown RBP eCLIP18.38■□□□□ 0.53
CLN6-220ENST00000637450 AKAP7Q9P0M2 348 aaPredicted RBP18.38■□□□□ 0.53
CLN6-220ENST00000637450 AMACRQ9UHK6 382 aa18.38■□□□□ 0.53
CLN6-220ENST00000637450 LUC7L2Q9Y383 392 aaKnown RBP18.38■□□□□ 0.53
CLN6-220ENST00000637450 IGHV5-10-1A0A0J9YXX1 117 aa18.37■□□□□ 0.53
CLN6-220ENST00000637450 HGSO14964 777 aaPredicted RBP18.37■□□□□ 0.53
CLN6-220ENST00000637450 PRLP01236 227 aa18.37■□□□□ 0.53
CLN6-220ENST00000637450 PYGLP06737 847 aa18.37■□□□□ 0.53
CLN6-220ENST00000637450 CCL4P13236 92 aa18.37■□□□□ 0.53
CLN6-220ENST00000637450 CD82P27701 267 aa18.37■□□□□ 0.53
CLN6-220ENST00000637450 ACTR1BP42025 376 aa18.37■□□□□ 0.53
CLN6-220ENST00000637450 STC1P52823 247 aa18.37■□□□□ 0.53
CLN6-220ENST00000637450 EPHB1P54762 984 aa18.37■□□□□ 0.53
CLN6-220ENST00000637450 ACTR1AP61163 376 aa18.37■□□□□ 0.53
CLN6-220ENST00000637450 TPM4P67936 248 aa18.37■□□□□ 0.53
CLN6-220ENST00000637450 DSC2Q02487 901 aa18.37■□□□□ 0.53
CLN6-220ENST00000637450 BIRC2Q13490 618 aa18.37■□□□□ 0.53
CLN6-220ENST00000637450 PDK2Q15119 407 aa18.37■□□□□ 0.53
CLN6-220ENST00000637450 IFI16Q16666 785 aaKnown RBP18.37■□□□□ 0.53
CLN6-220ENST00000637450 LINC00303Q3SY05 128 aa18.37■□□□□ 0.53
CLN6-220ENST00000637450 PYCR3Q53H96 274 aa18.37■□□□□ 0.53
CLN6-220ENST00000637450 CPNE8Q86YQ8 564 aa18.37■□□□□ 0.53
CLN6-220ENST00000637450 RAVER1Q8IY67 606 aaKnown RBP18.37■□□□□ 0.53
CLN6-220ENST00000637450 NRSN1Q8IZ57 195 aa18.37■□□□□ 0.53
CLN6-220ENST00000637450 KCTD6Q8NC69 237 aa18.37■□□□□ 0.53
CLN6-220ENST00000637450 ARRDC2Q8TBH0 407 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms