RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 ZBTB17Q13105 803 aa12.67□□□□□ -0.38
PNKP-217ENST00000625216 CAMK2BQ13554 666 aa12.67□□□□□ -0.38
PNKP-217ENST00000625216 HLTFQ14527 1009 aaKnown RBP eCLIP12.67□□□□□ -0.38
PNKP-217ENST00000625216 ZNF235Q14590 738 aa12.67□□□□□ -0.38
PNKP-217ENST00000625216 P3H1Q32P28 736 aa12.67□□□□□ -0.38
PNKP-217ENST00000625216 FAM153CQ494X1 144 aa12.67□□□□□ -0.38
PNKP-217ENST00000625216 LRRC73Q5JTD7 316 aa12.67□□□□□ -0.38
PNKP-217ENST00000625216 PROSER1Q86XN7 944 aa12.67□□□□□ -0.38
PNKP-217ENST00000625216 CCDC13Q8IYE1 715 aa12.67□□□□□ -0.38
PNKP-217ENST00000625216 TAB3Q8N5C8 712 aaPredicted RBP12.67□□□□□ -0.38
PNKP-217ENST00000625216 PAF1Q8N7H5 531 aa12.67□□□□□ -0.38
PNKP-217ENST00000625216 EIF1ADQ8N9N8 165 aaKnown RBP12.67□□□□□ -0.38
PNKP-217ENST00000625216 TP53I13Q8NBR0 393 aaPredicted RBP12.67□□□□□ -0.38
PNKP-217ENST00000625216 FBXO25Q8TCJ0 367 aa12.67□□□□□ -0.38
PNKP-217ENST00000625216 CCHCR1Q8TD31 782 aa12.67□□□□□ -0.38
PNKP-217ENST00000625216 SPATA13Q96N96 652 aa12.67□□□□□ -0.38
PNKP-217ENST00000625216 TSGA13Q96PP4 275 aa12.67□□□□□ -0.38
PNKP-217ENST00000625216 WRAP53Q9BUR4 548 aaKnown RBP12.67□□□□□ -0.38
PNKP-217ENST00000625216 CEP41Q9BYV8 373 aa12.67□□□□□ -0.38
PNKP-217ENST00000625216 BRD8Q9H0E9 1235 aa12.67□□□□□ -0.38
PNKP-217ENST00000625216 PAK5Q9P286 719 aa12.67□□□□□ -0.38
PNKP-217ENST00000625216 FAM153AQ9UHL3 310 aa12.67□□□□□ -0.38
PNKP-217ENST00000625216 TRPM6Q9BX84 2022 aa12.66□□□□□ -0.38
PNKP-217ENST00000625216 TMEM131Q92545 1883 aa12.66□□□□□ -0.38
PNKP-217ENST00000625216 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.66□□□□□ -0.38
PNKP-217ENST00000625216 TRABD2BA6NFA1 517 aa12.66□□□□□ -0.38
PNKP-217ENST00000625216 SRRM3A6NNA2 597 aaPredicted RBP12.66□□□□□ -0.38
PNKP-217ENST00000625216 K7ESM1 405 aa12.66□□□□□ -0.38
PNKP-217ENST00000625216 KCNK1O00180 336 aa12.66□□□□□ -0.38
PNKP-217ENST00000625216 MUSKO15146 869 aa12.66□□□□□ -0.38
PNKP-217ENST00000625216 AQP9O43315 295 aa12.66□□□□□ -0.38
PNKP-217ENST00000625216 LZTS3O60299 673 aaPredicted RBP12.66□□□□□ -0.38
PNKP-217ENST00000625216 SOCS5O75159 536 aa12.66□□□□□ -0.38
PNKP-217ENST00000625216 PEX11BO96011 259 aa12.66□□□□□ -0.38
PNKP-217ENST00000625216 C6P13671 934 aa12.66□□□□□ -0.38
PNKP-217ENST00000625216 MMP12P39900 470 aa12.66□□□□□ -0.38
PNKP-217ENST00000625216 ADCY8P40145 1251 aa12.66□□□□□ -0.38
PNKP-217ENST00000625216 LIG3P49916 1009 aa12.66□□□□□ -0.38
PNKP-217ENST00000625216 BLKP51451 505 aa12.66□□□□□ -0.38
PNKP-217ENST00000625216 EIF2B5Q13144 721 aaKnown RBP12.66□□□□□ -0.38
PNKP-217ENST00000625216 WSCD2Q2TBF2 565 aa12.66□□□□□ -0.38
PNKP-217ENST00000625216 ZNF542PQ5EBM4 170 aa12.66□□□□□ -0.38
PNKP-217ENST00000625216 RNASEH2BQ5TBB1 312 aaKnown RBP12.66□□□□□ -0.38
PNKP-217ENST00000625216 FAXCQ5TGI0 409 aa12.66□□□□□ -0.38
PNKP-217ENST00000625216 MARC1Q5VT66 337 aa12.66□□□□□ -0.38
PNKP-217ENST00000625216 ANKRD22Q5VYY1 191 aa12.66□□□□□ -0.38
PNKP-217ENST00000625216 HIBCHQ6NVY1 386 aaPredicted RBP12.66□□□□□ -0.38
PNKP-217ENST00000625216 ZCCHC8Q6NZY4 707 aaKnown RBP12.66□□□□□ -0.38
PNKP-217ENST00000625216 MACC1Q6ZN28 852 aa12.66□□□□□ -0.38
PNKP-217ENST00000625216 ZSWIM9Q86XI8 627 aa12.66□□□□□ -0.38
PNKP-217ENST00000625216 ZNF567Q8N184 647 aa12.66□□□□□ -0.38
PNKP-217ENST00000625216 ZNF548Q8NEK5 533 aaPredicted RBP12.66□□□□□ -0.38
PNKP-217ENST00000625216 ART4Q93070 314 aa12.66□□□□□ -0.38
PNKP-217ENST00000625216 NUDCD1Q96RS6 583 aa12.66□□□□□ -0.38
PNKP-217ENST00000625216 MBNL1Q9NR56 388 aaKnown RBP12.66□□□□□ -0.38
PNKP-217ENST00000625216 ARGLU1Q9NWB6 273 aaPredicted RBP12.66□□□□□ -0.38
PNKP-217ENST00000625216 KCTD5Q9NXV2 234 aa12.66□□□□□ -0.38
PNKP-217ENST00000625216 SEPT10Q9P0V9 454 aa12.66□□□□□ -0.38
PNKP-217ENST00000625216 SPASTQ9UBP0 616 aa12.66□□□□□ -0.38
PNKP-217ENST00000625216 KNTC1P50748 2209 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 ANKRD36A6QL64 1941 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 FFAR2O15552 330 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 HTRA2O43464 458 aaPredicted RBP12.65□□□□□ -0.38
PNKP-217ENST00000625216 ERLIN1O75477 346 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 GCATO75600 419 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 TMEM63AO94886 807 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 METTL18O95568 372 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 GP1BAP07359 652 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 CR2P20023 1033 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 CES1P23141 567 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 CCNCP24863 283 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 HTR1BP28222 390 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 PLTPP55058 493 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 PPARDQ03181 441 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 CALCOCO2Q13137 446 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 MTM1Q13496 603 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 IRF4Q15306 451 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 ANKRD20A2Q5SQ80 823 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 BEND6Q5SZJ8 279 aaPredicted RBP12.65□□□□□ -0.38
PNKP-217ENST00000625216 TPRG1LQ5T0D9 272 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 ANKRD20A1Q5TYW2 823 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 ANKRD20A3Q5VUR7 823 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 DPPA4Q7L190 304 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 SDR16C5Q8N3Y7 309 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 TEX26Q8N6G2 289 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 LMX1AQ8TE12 382 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 HNRNPLLQ8WVV9 542 aaKnown RBP12.65□□□□□ -0.38
PNKP-217ENST00000625216 CPT1BQ92523 772 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 MAML1Q92585 1016 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 GLMNQ92990 594 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 FATE1Q969F0 183 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 LRRC45Q96CN5 670 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 APOLD1Q96LR9 279 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 IL12RB2Q99665 862 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 MGME1Q9BQP7 344 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 SLC13A1Q9BZW2 595 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 SCUBE2Q9NQ36 999 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 HAUS2Q9NVX0 235 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 KLF15Q9UIH9 416 aa12.65□□□□□ -0.38
PNKP-217ENST00000625216 FREM2Q5SZK8 3169 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms