RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 C17orf82Q86X59 251 aaPredicted RBP18.93■□□□□ 0.62
CDX1-202ENST00000616154 VSIG1Q86XK7 387 aa18.93■□□□□ 0.62
CDX1-202ENST00000616154 SLITRK4Q8IW52 837 aa18.93■□□□□ 0.62
CDX1-202ENST00000616154 RHOT2Q8IXI1 618 aa18.93■□□□□ 0.62
CDX1-202ENST00000616154 CBARPQ8N350 705 aaPredicted RBP18.93■□□□□ 0.62
CDX1-202ENST00000616154 PGBD5Q8N414 524 aa18.93■□□□□ 0.62
CDX1-202ENST00000616154 GPBAR1Q8TDU6 330 aa18.93■□□□□ 0.62
CDX1-202ENST00000616154 DTD2Q96FN9 168 aa18.93■□□□□ 0.62
CDX1-202ENST00000616154 CARS2Q9HA77 564 aaKnown RBP18.93■□□□□ 0.62
CDX1-202ENST00000616154 SPTLC3Q9NUV7 552 aa18.93■□□□□ 0.62
CDX1-202ENST00000616154 ZFC3H1O60293 1989 aaKnown RBP18.92■□□□□ 0.62
CDX1-202ENST00000616154 B8ZZF3 427 aa18.92■□□□□ 0.62
CDX1-202ENST00000616154 PSMD11O00231 422 aa18.92■□□□□ 0.62
CDX1-202ENST00000616154 PTMAP06454 111 aaKnown RBP18.92■□□□□ 0.62
CDX1-202ENST00000616154 CEACAM5P06731 702 aa18.92■□□□□ 0.62
CDX1-202ENST00000616154 CCNB1P14635 433 aa18.92■□□□□ 0.62
CDX1-202ENST00000616154 TEAD1P28347 426 aa18.92■□□□□ 0.62
CDX1-202ENST00000616154 B4GALNT1Q00973 533 aa18.92■□□□□ 0.62
CDX1-202ENST00000616154 GALNT2Q10471 571 aa18.92■□□□□ 0.62
CDX1-202ENST00000616154 TRAF2Q12933 501 aa18.92■□□□□ 0.62
CDX1-202ENST00000616154 MMRN1Q13201 1228 aa18.92■□□□□ 0.62
CDX1-202ENST00000616154 TGIF1Q15583 401 aa18.92■□□□□ 0.62
CDX1-202ENST00000616154 ATP13A4Q4VNC1 1196 aa18.92■□□□□ 0.62
CDX1-202ENST00000616154 NCBP2-AS2Q69YL0 99 aa18.92■□□□□ 0.62
CDX1-202ENST00000616154 TMPRSS9Q7Z410 1059 aa18.92■□□□□ 0.62
CDX1-202ENST00000616154 ZNF438Q7Z4V0 828 aa18.92■□□□□ 0.62
CDX1-202ENST00000616154 NRROSQ86YC3 692 aa18.92■□□□□ 0.62
CDX1-202ENST00000616154 BBS5Q8N3I7 341 aa18.92■□□□□ 0.62
CDX1-202ENST00000616154 ATPAF2Q8N5M1 289 aa18.92■□□□□ 0.62
CDX1-202ENST00000616154 TEX26Q8N6G2 289 aa18.92■□□□□ 0.62
CDX1-202ENST00000616154 SLC35G2Q8TBE7 412 aa18.92■□□□□ 0.62
CDX1-202ENST00000616154 PDCD6IPQ8WUM4 868 aaKnown RBP18.92■□□□□ 0.62
CDX1-202ENST00000616154 CMKLR1Q99788 373 aa18.92■□□□□ 0.62
CDX1-202ENST00000616154 GSDMCQ9BYG8 508 aa18.92■□□□□ 0.62
CDX1-202ENST00000616154 FRMD8Q9BZ67 464 aaPredicted RBP18.92■□□□□ 0.62
CDX1-202ENST00000616154 NOD2Q9HC29 1040 aa18.92■□□□□ 0.62
CDX1-202ENST00000616154 SPATS2LQ9NUQ6 558 aaKnown RBP18.92■□□□□ 0.62
CDX1-202ENST00000616154 TRNAU1APQ9NX07 287 aaKnown RBP18.92■□□□□ 0.62
CDX1-202ENST00000616154 PHTF1Q9UMS5 762 aa18.92■□□□□ 0.62
CDX1-202ENST00000616154 MYO18BQ8IUG5 2567 aa18.92■□□□□ 0.62
CDX1-202ENST00000616154 MFSD11O43934 449 aa18.91■□□□□ 0.62
CDX1-202ENST00000616154 CYP2A6P11509 494 aaPredicted RBP18.91■□□□□ 0.62
CDX1-202ENST00000616154 ITIH1P19827 911 aa18.91■□□□□ 0.62
CDX1-202ENST00000616154 LHCGRP22888 699 aa18.91■□□□□ 0.62
CDX1-202ENST00000616154 ETV3P41162 512 aa18.91■□□□□ 0.62
CDX1-202ENST00000616154 CDK3Q00526 305 aa18.91■□□□□ 0.62
CDX1-202ENST00000616154 ILF3Q12906 894 aaKnown RBP eCLIP18.91■□□□□ 0.62
CDX1-202ENST00000616154 NR1D2Q14995 579 aa18.91■□□□□ 0.62
CDX1-202ENST00000616154 CLPPQ16740 277 aaPredicted RBP18.91■□□□□ 0.62
CDX1-202ENST00000616154 ANKRD20A8PQ5CZ79 823 aa18.91■□□□□ 0.62
CDX1-202ENST00000616154 LRRC38Q5VT99 294 aa18.91■□□□□ 0.62
CDX1-202ENST00000616154 ALG1LQ6GMV1 187 aa18.91■□□□□ 0.62
CDX1-202ENST00000616154 RAD9BQ6WBX8 426 aa18.91■□□□□ 0.62
CDX1-202ENST00000616154 HSD11B1LQ7Z5J1 315 aa18.91■□□□□ 0.62
CDX1-202ENST00000616154 MAP7D3Q8IWC1 876 aa18.91■□□□□ 0.62
CDX1-202ENST00000616154 MAML1Q92585 1016 aa18.91■□□□□ 0.62
CDX1-202ENST00000616154 MCCC1Q96RQ3 725 aaPredicted RBP18.91■□□□□ 0.62
CDX1-202ENST00000616154 PRAMEF33A0A0G2JMD5 474 aa18.9■□□□□ 0.62
CDX1-202ENST00000616154 SOWAHDA6NJG2 315 aa18.9■□□□□ 0.62
CDX1-202ENST00000616154 ARHGAP6O43182 974 aa18.9■□□□□ 0.62
CDX1-202ENST00000616154 B4GAT1O43505 415 aa18.9■□□□□ 0.62
CDX1-202ENST00000616154 PRAMEF10O60809 474 aa18.9■□□□□ 0.62
CDX1-202ENST00000616154 CPNE6O95741 557 aa18.9■□□□□ 0.62
CDX1-202ENST00000616154 FUCA1P04066 466 aa18.9■□□□□ 0.62
CDX1-202ENST00000616154 FGF1P05230 155 aa18.9■□□□□ 0.62
CDX1-202ENST00000616154 ETV5P41161 510 aa18.9■□□□□ 0.62
CDX1-202ENST00000616154 GARSP41250 739 aaKnown RBP18.9■□□□□ 0.62
CDX1-202ENST00000616154 SSR1P43307 286 aaKnown RBP18.9■□□□□ 0.62
CDX1-202ENST00000616154 HADHBP55084 474 aaKnown RBP18.9■□□□□ 0.62
CDX1-202ENST00000616154 MAZP56270 477 aaKnown RBP18.9■□□□□ 0.62
CDX1-202ENST00000616154 MAP9Q49MG5 647 aa18.9■□□□□ 0.62
CDX1-202ENST00000616154 PHF19Q5T6S3 580 aa18.9■□□□□ 0.62
CDX1-202ENST00000616154 DENND2CQ68D51 928 aa18.9■□□□□ 0.62
CDX1-202ENST00000616154 PQLC3Q8N755 202 aa18.9■□□□□ 0.62
CDX1-202ENST00000616154 ZDHHC1Q8WTX9 485 aa18.9■□□□□ 0.62
CDX1-202ENST00000616154 SCRN2Q96FV2 425 aa18.9■□□□□ 0.62
CDX1-202ENST00000616154 TSGA13Q96PP4 275 aa18.9■□□□□ 0.62
CDX1-202ENST00000616154 B3GNT4Q9C0J1 378 aa18.9■□□□□ 0.62
CDX1-202ENST00000616154 SEMA6CQ9H3T2 930 aa18.9■□□□□ 0.62
CDX1-202ENST00000616154 WDR70Q9NW82 654 aa18.9■□□□□ 0.62
CDX1-202ENST00000616154 SEPT10Q9P0V9 454 aa18.9■□□□□ 0.62
CDX1-202ENST00000616154 TAAR2Q9P1P5 351 aa18.9■□□□□ 0.62
CDX1-202ENST00000616154 SLC17A4Q9Y2C5 497 aa18.9■□□□□ 0.62
CDX1-202ENST00000616154 TLN1Q9Y490 2541 aaKnown RBP18.89■□□□□ 0.61
CDX1-202ENST00000616154 NPIPB15A6NHN6 443 aaPredicted RBP18.89■□□□□ 0.61
CDX1-202ENST00000616154 PGLSO95336 258 aa18.89■□□□□ 0.61
CDX1-202ENST00000616154 MMP13P45452 471 aa18.89■□□□□ 0.61
CDX1-202ENST00000616154 GNPDA1P46926 289 aa18.89■□□□□ 0.61
CDX1-202ENST00000616154 MAXP61244 160 aa18.89■□□□□ 0.61
CDX1-202ENST00000616154 C16orf72Q14CZ0 275 aa18.89■□□□□ 0.61
CDX1-202ENST00000616154 MARC1Q5VT66 337 aa18.89■□□□□ 0.61
CDX1-202ENST00000616154 USP53Q70EK8 1073 aa18.89■□□□□ 0.61
CDX1-202ENST00000616154 PIM3Q86V86 326 aa18.89■□□□□ 0.61
CDX1-202ENST00000616154 KCTD6Q8NC69 237 aa18.89■□□□□ 0.61
CDX1-202ENST00000616154 NSMCE1Q8WV22 266 aa18.89■□□□□ 0.61
CDX1-202ENST00000616154 USP7Q93009 1102 aa18.89■□□□□ 0.61
CDX1-202ENST00000616154 SGF29Q96ES7 293 aa18.89■□□□□ 0.61
CDX1-202ENST00000616154 SUDS3Q9H7L9 328 aaPredicted RBP18.89■□□□□ 0.61
CDX1-202ENST00000616154 FOXJ2Q9P0K8 574 aa18.89■□□□□ 0.61
CDX1-202ENST00000616154 AMACRQ9UHK6 382 aa18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms