RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 TEX101Q9BY14 249 aa14.11□□□□□ -0.15
LIG1-218ENST00000599322 GSDMCQ9BYG8 508 aa14.11□□□□□ -0.15
LIG1-218ENST00000599322 GPR63Q9BZJ6 419 aa14.11□□□□□ -0.15
LIG1-218ENST00000599322 CDH19Q9H159 772 aa14.11□□□□□ -0.15
LIG1-218ENST00000599322 TCEAL2Q9H3H9 227 aaPredicted RBP14.11□□□□□ -0.15
LIG1-218ENST00000599322 CARS2Q9HA77 564 aaKnown RBP14.11□□□□□ -0.15
LIG1-218ENST00000599322 ZFYVE1Q9HBF4 777 aa14.11□□□□□ -0.15
LIG1-218ENST00000599322 LHX6Q9UPM6 363 aa14.11□□□□□ -0.15
LIG1-218ENST00000599322 AK5Q9Y6K8 562 aa14.11□□□□□ -0.15
LIG1-218ENST00000599322 TDRD6O60522 2096 aaKnown RBP14.11□□□□□ -0.15
LIG1-218ENST00000599322 MYLKQ15746 1914 aa14.11□□□□□ -0.15
LIG1-218ENST00000599322 CELSR3Q9NYQ7 3312 aa14.1□□□□□ -0.15
LIG1-218ENST00000599322 PRSS38A1L453 326 aa14.1□□□□□ -0.15
LIG1-218ENST00000599322 EME2A4GXA9 379 aaPredicted RBP14.1□□□□□ -0.15
LIG1-218ENST00000599322 TMEM202A6NGA9 273 aa14.1□□□□□ -0.15
LIG1-218ENST00000599322 KRT86O43790 486 aa14.1□□□□□ -0.15
LIG1-218ENST00000599322 OPA1O60313 960 aa14.1□□□□□ -0.15
LIG1-218ENST00000599322 PMPCBO75439 489 aa14.1□□□□□ -0.15
LIG1-218ENST00000599322 CLDN7O95471 211 aa14.1□□□□□ -0.15
LIG1-218ENST00000599322 GIMD1P0DJR0 217 aa14.1□□□□□ -0.15
LIG1-218ENST00000599322 STC1P52823 247 aa14.1□□□□□ -0.15
LIG1-218ENST00000599322 CDK3Q00526 305 aa14.1□□□□□ -0.15
LIG1-218ENST00000599322 PTSQ03393 145 aa14.1□□□□□ -0.15
LIG1-218ENST00000599322 COL9A2Q14055 689 aaPredicted RBP14.1□□□□□ -0.15
LIG1-218ENST00000599322 PRPSAP1Q14558 356 aa14.1□□□□□ -0.15
LIG1-218ENST00000599322 PRKD1Q15139 912 aaPredicted RBP14.1□□□□□ -0.15
LIG1-218ENST00000599322 QPCTQ16769 361 aa14.1□□□□□ -0.15
LIG1-218ENST00000599322 ADAMTSL4Q6UY14 1074 aa14.1□□□□□ -0.15
LIG1-218ENST00000599322 KDELC2Q7Z4H8 507 aa14.1□□□□□ -0.15
LIG1-218ENST00000599322 TECPR1Q7Z6L1 1165 aa14.1□□□□□ -0.15
LIG1-218ENST00000599322 CDKL3Q8IVW4 592 aaPredicted RBP14.1□□□□□ -0.15
LIG1-218ENST00000599322 CBARPQ8N350 705 aaPredicted RBP14.1□□□□□ -0.15
LIG1-218ENST00000599322 CNTD1Q8N815 330 aa14.1□□□□□ -0.15
LIG1-218ENST00000599322 TTC13Q8NBP0 860 aa14.1□□□□□ -0.15
LIG1-218ENST00000599322 CCDC112Q8NEF3 446 aa14.1□□□□□ -0.15
LIG1-218ENST00000599322 OR1E3Q8WZA6 343 aa14.1□□□□□ -0.15
LIG1-218ENST00000599322 GRAMD1AQ96CP6 724 aa14.1□□□□□ -0.15
LIG1-218ENST00000599322 PPP1R2P1Q96PQ5 205 aa14.1□□□□□ -0.15
LIG1-218ENST00000599322 LYSMD1Q96S90 227 aa14.1□□□□□ -0.15
LIG1-218ENST00000599322 BOCQ9BWV1 1114 aa14.1□□□□□ -0.15
LIG1-218ENST00000599322 OSBPL8Q9BZF1 889 aa14.1□□□□□ -0.15
LIG1-218ENST00000599322 ABCG8Q9H221 673 aa14.1□□□□□ -0.15
LIG1-218ENST00000599322 DPEP2Q9H4A9 486 aa14.1□□□□□ -0.15
LIG1-218ENST00000599322 FAM83DQ9H4H8 585 aa14.1□□□□□ -0.15
LIG1-218ENST00000599322 SUDS3Q9H7L9 328 aaPredicted RBP14.1□□□□□ -0.15
LIG1-218ENST00000599322 SIRPGQ9P1W8 387 aa14.1□□□□□ -0.15
LIG1-218ENST00000599322 SAE1Q9UBE0 346 aaPredicted RBP14.1□□□□□ -0.15
LIG1-218ENST00000599322 FAM153AQ9UHL3 310 aa14.1□□□□□ -0.15
LIG1-218ENST00000599322 CD84Q9UIB8 345 aa14.1□□□□□ -0.15
LIG1-218ENST00000599322 DUSP10Q9Y6W6 482 aa14.1□□□□□ -0.15
LIG1-218ENST00000599322 NDST3O95803 873 aa14.09□□□□□ -0.15
LIG1-218ENST00000599322 PECAM1P16284 738 aaPredicted RBP14.09□□□□□ -0.15
LIG1-218ENST00000599322 PTPN3P26045 913 aa14.09□□□□□ -0.15
LIG1-218ENST00000599322 GNPDA1P46926 289 aa14.09□□□□□ -0.15
LIG1-218ENST00000599322 INSM1Q01101 510 aaPredicted RBP14.09□□□□□ -0.15
LIG1-218ENST00000599322 GALNT3Q14435 633 aa14.09□□□□□ -0.15
LIG1-218ENST00000599322 TCEA2Q15560 299 aa14.09□□□□□ -0.15
LIG1-218ENST00000599322 DARS2Q6PI48 645 aaKnown RBP14.09□□□□□ -0.15
LIG1-218ENST00000599322 DOK6Q6PKX4 331 aa14.09□□□□□ -0.15
LIG1-218ENST00000599322 RNF10Q8N5U6 811 aaKnown RBP14.09□□□□□ -0.15
LIG1-218ENST00000599322 KRT35Q92764 455 aa14.09□□□□□ -0.15
LIG1-218ENST00000599322 PDXPQ96GD0 296 aa14.09□□□□□ -0.15
LIG1-218ENST00000599322 HIC2Q96JB3 615 aa14.09□□□□□ -0.15
LIG1-218ENST00000599322 RIOK2Q9BVS4 552 aaKnown RBP14.09□□□□□ -0.15
LIG1-218ENST00000599322 LGR4Q9BXB1 951 aa14.09□□□□□ -0.15
LIG1-218ENST00000599322 LACRTQ9GZZ8 138 aa14.09□□□□□ -0.15
LIG1-218ENST00000599322 CLPBQ9H078 707 aa14.09□□□□□ -0.15
LIG1-218ENST00000599322 SYNDIG1Q9H7V2 258 aa14.09□□□□□ -0.15
LIG1-218ENST00000599322 MAGEE1Q9HCI5 957 aa14.09□□□□□ -0.15
LIG1-218ENST00000599322 FGF22Q9HCT0 170 aa14.09□□□□□ -0.15
LIG1-218ENST00000599322 TRNAU1APQ9NX07 287 aaKnown RBP14.09□□□□□ -0.15
LIG1-218ENST00000599322 RSPH14Q9UHP6 348 aa14.09□□□□□ -0.15
LIG1-218ENST00000599322 GPSM3Q9Y4H4 160 aa14.09□□□□□ -0.15
LIG1-218ENST00000599322 ACACAQ13085 2346 aa14.09□□□□□ -0.15
LIG1-218ENST00000599322 LOC400499M0QZD8 3231 aa14.09□□□□□ -0.15
LIG1-218ENST00000599322 ATRXP46100 2492 aa14.08□□□□□ -0.15
LIG1-218ENST00000599322 RCCD1A6NED2 376 aa14.08□□□□□ -0.16
LIG1-218ENST00000599322 ANXA9O76027 345 aa14.08□□□□□ -0.16
LIG1-218ENST00000599322 PRLP01236 227 aa14.08□□□□□ -0.16
LIG1-218ENST00000599322 MMP2P08253 660 aa14.08□□□□□ -0.16
LIG1-218ENST00000599322 MYF5P13349 255 aa14.08□□□□□ -0.16
LIG1-218ENST00000599322 MARCKSL1P49006 195 aa14.08□□□□□ -0.16
LIG1-218ENST00000599322 SPINT3P49223 89 aa14.08□□□□□ -0.16
LIG1-218ENST00000599322 EIF3EP60228 445 aaKnown RBP14.08□□□□□ -0.16
LIG1-218ENST00000599322 GUSBP11Q6P575 273 aa14.08□□□□□ -0.16
LIG1-218ENST00000599322 B4GALNT4Q76KP1 1039 aa14.08□□□□□ -0.16
LIG1-218ENST00000599322 GALNT13Q8IUC8 556 aa14.08□□□□□ -0.16
LIG1-218ENST00000599322 SLC35F3Q8IY50 421 aa14.08□□□□□ -0.16
LIG1-218ENST00000599322 SCAMP4Q969E2 229 aa14.08□□□□□ -0.16
LIG1-218ENST00000599322 QKIQ96PU8 341 aaKnown RBP eCLIP14.08□□□□□ -0.16
LIG1-218ENST00000599322 FSD1LQ9BXM9 530 aa14.08□□□□□ -0.16
LIG1-218ENST00000599322 NRSN2Q9GZP1 204 aa14.08□□□□□ -0.16
LIG1-218ENST00000599322 TMEM168Q9H0V1 697 aa14.08□□□□□ -0.16
LIG1-218ENST00000599322 TRABDQ9H4I3 376 aa14.08□□□□□ -0.16
LIG1-218ENST00000599322 MRPL40Q9NQ50 206 aaKnown RBP14.08□□□□□ -0.16
LIG1-218ENST00000599322 HACD3Q9P035 362 aa14.08□□□□□ -0.16
LIG1-218ENST00000599322 REXO2Q9Y3B8 237 aaKnown RBP14.08□□□□□ -0.16
LIG1-218ENST00000599322 APC2O95996 2303 aa14.07□□□□□ -0.16
LIG1-218ENST00000599322 GRID2IPA4D2P6 1211 aa14.07□□□□□ -0.16
LIG1-218ENST00000599322 TMX2-CTNND1H3BSU7 103 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms