RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 VPS18Q9P253 973 aa13.57□□□□□ -0.24
TRIM28-211ENST00000597968 CAPN11Q9UMQ6 739 aa13.57□□□□□ -0.24
TRIM28-211ENST00000597968 STMND1H3BQB6 276 aa13.56□□□□□ -0.24
TRIM28-211ENST00000597968 CASC3O15234 703 aaKnown RBP13.56□□□□□ -0.24
TRIM28-211ENST00000597968 EFSO43281 561 aa13.56□□□□□ -0.24
TRIM28-211ENST00000597968 FUCA1P04066 466 aa13.56□□□□□ -0.24
TRIM28-211ENST00000597968 ADCY8P40145 1251 aa13.56□□□□□ -0.24
TRIM28-211ENST00000597968 PBX1P40424 430 aa13.56□□□□□ -0.24
TRIM28-211ENST00000597968 GNPDA1P46926 289 aa13.56□□□□□ -0.24
TRIM28-211ENST00000597968 LIMK2P53671 638 aa13.56□□□□□ -0.24
TRIM28-211ENST00000597968 CTBSQ01459 385 aa13.56□□□□□ -0.24
TRIM28-211ENST00000597968 MANEAQ5SRI9 462 aa13.56□□□□□ -0.24
TRIM28-211ENST00000597968 ALKBH5Q6P6C2 394 aaKnown RBP13.56□□□□□ -0.24
TRIM28-211ENST00000597968 LUZP1Q86V48 1076 aa13.56□□□□□ -0.24
TRIM28-211ENST00000597968 NAGSQ8N159 534 aa13.56□□□□□ -0.24
TRIM28-211ENST00000597968 PELI3Q8N2H9 469 aa13.56□□□□□ -0.24
TRIM28-211ENST00000597968 AVL9Q8NBF6 648 aa13.56□□□□□ -0.24
TRIM28-211ENST00000597968 COX14Q96I36 57 aa13.56□□□□□ -0.24
TRIM28-211ENST00000597968 TAAR9Q96RI9 348 aa13.56□□□□□ -0.24
TRIM28-211ENST00000597968 SEMA3CQ99985 751 aa13.56□□□□□ -0.24
TRIM28-211ENST00000597968 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.56□□□□□ -0.24
TRIM28-211ENST00000597968 NUP85Q9BW27 656 aa13.56□□□□□ -0.24
TRIM28-211ENST00000597968 ASPSCR1Q9BZE9 553 aa13.56□□□□□ -0.24
TRIM28-211ENST00000597968 THAP2Q9H0W7 228 aa13.56□□□□□ -0.24
TRIM28-211ENST00000597968 RMI1Q9H9A7 625 aa13.56□□□□□ -0.24
TRIM28-211ENST00000597968 CBX8Q9HC52 389 aa13.56□□□□□ -0.24
TRIM28-211ENST00000597968 UVRAGQ9P2Y5 699 aa13.56□□□□□ -0.24
TRIM28-211ENST00000597968 ANKRD36A6QL64 1941 aa13.55□□□□□ -0.24
TRIM28-211ENST00000597968 PRAMEF33A0A0G2JMD5 474 aa13.55□□□□□ -0.24
TRIM28-211ENST00000597968 ZNF487B1APH4 448 aa13.55□□□□□ -0.24
TRIM28-211ENST00000597968 GPR89AB7ZAQ6 455 aa13.55□□□□□ -0.24
TRIM28-211ENST00000597968 PRAMEF10O60809 474 aa13.55□□□□□ -0.24
TRIM28-211ENST00000597968 ECEL1O95672 775 aa13.55□□□□□ -0.24
TRIM28-211ENST00000597968 SOD1P00441 154 aa13.55□□□□□ -0.24
TRIM28-211ENST00000597968 KRT7P08729 469 aa13.55□□□□□ -0.24
TRIM28-211ENST00000597968 GPR89BP0CG08 455 aa13.55□□□□□ -0.24
TRIM28-211ENST00000597968 SLC2A4P14672 509 aa13.55□□□□□ -0.24
TRIM28-211ENST00000597968 TCF4P15884 667 aa13.55□□□□□ -0.24
TRIM28-211ENST00000597968 CD1CP29017 333 aa13.55□□□□□ -0.24
TRIM28-211ENST00000597968 ALDH4A1P30038 563 aa13.55□□□□□ -0.24
TRIM28-211ENST00000597968 ARSEP51690 589 aa13.55□□□□□ -0.24
TRIM28-211ENST00000597968 EPHB1P54762 984 aa13.55□□□□□ -0.24
TRIM28-211ENST00000597968 RAB15P59190 212 aa13.55□□□□□ -0.24
TRIM28-211ENST00000597968 MAXP61244 160 aa13.55□□□□□ -0.24
TRIM28-211ENST00000597968 PTSQ03393 145 aa13.55□□□□□ -0.24
TRIM28-211ENST00000597968 TCEA2Q15560 299 aa13.55□□□□□ -0.24
TRIM28-211ENST00000597968 PHF19Q5T6S3 580 aa13.55□□□□□ -0.24
TRIM28-211ENST00000597968 LRRC66Q68CR7 880 aa13.55□□□□□ -0.24
TRIM28-211ENST00000597968 NYAP1Q6ZVC0 841 aa13.55□□□□□ -0.24
TRIM28-211ENST00000597968 VSIG1Q86XK7 387 aa13.55□□□□□ -0.24
TRIM28-211ENST00000597968 AGBL5Q8NDL9 886 aa13.55□□□□□ -0.24
TRIM28-211ENST00000597968 USP7Q93009 1102 aa13.55□□□□□ -0.24
TRIM28-211ENST00000597968 SH3KBP1Q96B97 665 aa13.55□□□□□ -0.24
TRIM28-211ENST00000597968 FAF2Q96CS3 445 aa13.55□□□□□ -0.24
TRIM28-211ENST00000597968 TEFMQ96QE5 360 aaKnown RBP13.55□□□□□ -0.24
TRIM28-211ENST00000597968 OR2M4Q96R27 311 aa13.55□□□□□ -0.24
TRIM28-211ENST00000597968 DDA1Q9BW61 102 aa13.55□□□□□ -0.24
TRIM28-211ENST00000597968 TDRD1Q9BXT4 1180 aaKnown RBP13.55□□□□□ -0.24
TRIM28-211ENST00000597968 ABCG8Q9H221 673 aa13.55□□□□□ -0.24
TRIM28-211ENST00000597968 STN1Q9H668 368 aaKnown RBP13.55□□□□□ -0.24
TRIM28-211ENST00000597968 NT5MQ9NPB1 228 aa13.55□□□□□ -0.24
TRIM28-211ENST00000597968 PDP2Q9P2J9 529 aa13.55□□□□□ -0.24
TRIM28-211ENST00000597968 LUC7L2Q9Y383 392 aaKnown RBP13.55□□□□□ -0.24
TRIM28-211ENST00000597968 COL6A6A6NMZ7 2263 aa13.54□□□□□ -0.24
TRIM28-211ENST00000597968 IGHV1OR21-1A0A087WYE8 117 aa13.54□□□□□ -0.24
TRIM28-211ENST00000597968 A0A087X0T9 212 aa13.54□□□□□ -0.24
TRIM28-211ENST00000597968 IGHV5-10-1A0A0J9YXX1 117 aa13.54□□□□□ -0.24
TRIM28-211ENST00000597968 TTC24A2A3L6 582 aaPredicted RBP13.54□□□□□ -0.24
TRIM28-211ENST00000597968 C9orf172C9J069 976 aa13.54□□□□□ -0.24
TRIM28-211ENST00000597968 CAPN5O15484 640 aaPredicted RBP13.54□□□□□ -0.24
TRIM28-211ENST00000597968 PDHA1P08559 390 aa13.54□□□□□ -0.24
TRIM28-211ENST00000597968 FAM228BP0C875 321 aa13.54□□□□□ -0.24
TRIM28-211ENST00000597968 HGFP14210 728 aa13.54□□□□□ -0.24
TRIM28-211ENST00000597968 ITIH1P19827 911 aa13.54□□□□□ -0.24
TRIM28-211ENST00000597968 HNRNPH3P31942 346 aaKnown RBP13.54□□□□□ -0.24
TRIM28-211ENST00000597968 MAN1A1P33908 653 aa13.54□□□□□ -0.24
TRIM28-211ENST00000597968 ACTR1BP42025 376 aa13.54□□□□□ -0.24
TRIM28-211ENST00000597968 ATP1A2P50993 1020 aa13.54□□□□□ -0.24
TRIM28-211ENST00000597968 STC1P52823 247 aa13.54□□□□□ -0.24
TRIM28-211ENST00000597968 MAZP56270 477 aaKnown RBP13.54□□□□□ -0.24
TRIM28-211ENST00000597968 UBASH3AP57075 661 aa13.54□□□□□ -0.24
TRIM28-211ENST00000597968 OR1D5P58170 312 aa13.54□□□□□ -0.24
TRIM28-211ENST00000597968 ACTR1AP61163 376 aa13.54□□□□□ -0.24
TRIM28-211ENST00000597968 ITKQ08881 620 aa13.54□□□□□ -0.24
TRIM28-211ENST00000597968 DPYSL3Q14195 570 aa13.54□□□□□ -0.24
TRIM28-211ENST00000597968 LY6DQ14210 128 aa13.54□□□□□ -0.24
TRIM28-211ENST00000597968 PYCR3Q53H96 274 aa13.54□□□□□ -0.24
TRIM28-211ENST00000597968 KIAA1614Q5VZ46 1190 aa13.54□□□□□ -0.24
TRIM28-211ENST00000597968 DENND2CQ68D51 928 aa13.54□□□□□ -0.24
TRIM28-211ENST00000597968 NCBP2-AS2Q69YL0 99 aa13.54□□□□□ -0.24
TRIM28-211ENST00000597968 TXNRD3NBQ6F5E7 133 aa13.54□□□□□ -0.24
TRIM28-211ENST00000597968 TMEM71Q6P5X7 295 aa13.54□□□□□ -0.24
TRIM28-211ENST00000597968 SLC30A9Q6PML9 568 aa13.54□□□□□ -0.24
TRIM28-211ENST00000597968 TMPRSS9Q7Z410 1059 aa13.54□□□□□ -0.24
TRIM28-211ENST00000597968 TSPAN33Q86UF1 283 aa13.54□□□□□ -0.24
TRIM28-211ENST00000597968 GALNT13Q8IUC8 556 aa13.54□□□□□ -0.24
TRIM28-211ENST00000597968 KCTD6Q8NC69 237 aa13.54□□□□□ -0.24
TRIM28-211ENST00000597968 ZNF564Q8TBZ8 553 aaPredicted RBP13.54□□□□□ -0.24
TRIM28-211ENST00000597968 HDAC11Q96DB2 347 aa13.54□□□□□ -0.24
TRIM28-211ENST00000597968 SEMA6CQ9H3T2 930 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms