RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 INTS10Q9NVR2 710 aaKnown RBP15.21■□□□□ 0.03
TRIM28-209ENST00000597423 TBK1Q9UHD2 729 aa15.21■□□□□ 0.03
TRIM28-209ENST00000597423 FKBPLQ9UIM3 349 aa15.21■□□□□ 0.03
TRIM28-209ENST00000597423 FADS3Q9Y5Q0 445 aa15.21■□□□□ 0.03
TRIM28-209ENST00000597423 MYO10Q9HD67 2058 aa15.2■□□□□ 0.02
TRIM28-209ENST00000597423 MIA3Q5JRA6 1907 aa15.2■□□□□ 0.02
TRIM28-209ENST00000597423 SRP72O76094 671 aaKnown RBP15.2■□□□□ 0.02
TRIM28-209ENST00000597423 SYF2O95926 243 aaKnown RBP15.2■□□□□ 0.02
TRIM28-209ENST00000597423 BPIP17213 487 aa15.2■□□□□ 0.02
TRIM28-209ENST00000597423 LHCGRP22888 699 aa15.2■□□□□ 0.02
TRIM28-209ENST00000597423 TARSP26639 723 aaKnown RBP15.2■□□□□ 0.02
TRIM28-209ENST00000597423 GCAP28676 217 aa15.2■□□□□ 0.02
TRIM28-209ENST00000597423 LEPRP48357 1165 aaKnown RBP15.2■□□□□ 0.02
TRIM28-209ENST00000597423 CD151P48509 253 aa15.2■□□□□ 0.02
TRIM28-209ENST00000597423 DCDC1P59894 354 aa15.2■□□□□ 0.02
TRIM28-209ENST00000597423 CTBP1Q13363 440 aa15.2■□□□□ 0.02
TRIM28-209ENST00000597423 ITGA9Q13797 1035 aa15.2■□□□□ 0.02
TRIM28-209ENST00000597423 ZNF284Q2VY69 593 aa15.2■□□□□ 0.02
TRIM28-209ENST00000597423 LRRC73Q5JTD7 316 aa15.2■□□□□ 0.02
TRIM28-209ENST00000597423 NEK5Q6P3R8 708 aa15.2■□□□□ 0.02
TRIM28-209ENST00000597423 LIPIQ6XZB0 460 aa15.2■□□□□ 0.02
TRIM28-209ENST00000597423 CYP2U1Q7Z449 544 aa15.2■□□□□ 0.02
TRIM28-209ENST00000597423 SNX20Q7Z614 316 aa15.2■□□□□ 0.02
TRIM28-209ENST00000597423 CILP2Q8IUL8 1156 aa15.2■□□□□ 0.02
TRIM28-209ENST00000597423 ZNF687Q8N1G0 1237 aa15.2■□□□□ 0.02
TRIM28-209ENST00000597423 PGBD3Q8N328 593 aa15.2■□□□□ 0.02
TRIM28-209ENST00000597423 EID2BQ96D98 161 aa15.2■□□□□ 0.02
TRIM28-209ENST00000597423 IER2Q9BTL4 223 aa15.2■□□□□ 0.02
TRIM28-209ENST00000597423 MKRN2Q9H000 416 aaKnown RBP15.2■□□□□ 0.02
TRIM28-209ENST00000597423 KDM4CQ9H3R0 1056 aa15.2■□□□□ 0.02
TRIM28-209ENST00000597423 RHOJQ9H4E5 214 aa15.2■□□□□ 0.02
TRIM28-209ENST00000597423 TBC1D17Q9HA65 648 aa15.2■□□□□ 0.02
TRIM28-209ENST00000597423 IL26Q9NPH9 171 aa15.2■□□□□ 0.02
TRIM28-209ENST00000597423 IL1RAPL1Q9NZN1 696 aa15.2■□□□□ 0.02
TRIM28-209ENST00000597423 FZD4Q9ULV1 537 aa15.2■□□□□ 0.02
TRIM28-209ENST00000597423 CORO1CQ9ULV4 474 aaPredicted RBP15.2■□□□□ 0.02
TRIM28-209ENST00000597423 NOVA2Q9UNW9 492 aaKnown RBP15.2■□□□□ 0.02
TRIM28-209ENST00000597423 FNDC3AQ9Y2H6 1198 aaKnown RBP15.2■□□□□ 0.02
TRIM28-209ENST00000597423 F5P12259 2224 aa15.19■□□□□ 0.02
TRIM28-209ENST00000597423 A0A1W2PP55 124 aa15.19■□□□□ 0.02
TRIM28-209ENST00000597423 TCRBV21S2A2A0A5A6 115 aa15.19■□□□□ 0.02
TRIM28-209ENST00000597423 GOLGA8CPA6NN73 597 aa15.19■□□□□ 0.02
TRIM28-209ENST00000597423 CCL22O00626 93 aa15.19■□□□□ 0.02
TRIM28-209ENST00000597423 PIAS1O75925 651 aa15.19■□□□□ 0.02
TRIM28-209ENST00000597423 PCDH8O95206 1070 aa15.19■□□□□ 0.02
TRIM28-209ENST00000597423 PRAMEF1O95521 474 aa15.19■□□□□ 0.02
TRIM28-209ENST00000597423 AHSGP02765 367 aa15.19■□□□□ 0.02
TRIM28-209ENST00000597423 COL9A1P20849 921 aa15.19■□□□□ 0.02
TRIM28-209ENST00000597423 SEMG2Q02383 582 aa15.19■□□□□ 0.02
TRIM28-209ENST00000597423 RALGDSQ12967 914 aa15.19■□□□□ 0.02
TRIM28-209ENST00000597423 PIP5KL1Q5T9C9 394 aa15.19■□□□□ 0.02
TRIM28-209ENST00000597423 KIAA1324Q6UXG2 1013 aaKnown RBP15.19■□□□□ 0.02
TRIM28-209ENST00000597423 HSD11B1LQ7Z5J1 315 aa15.19■□□□□ 0.02
TRIM28-209ENST00000597423 NLRP8Q86W28 1048 aa15.19■□□□□ 0.02
TRIM28-209ENST00000597423 AADATQ8N5Z0 425 aa15.19■□□□□ 0.02
TRIM28-209ENST00000597423 HEXDCQ8WVB3 486 aa15.19■□□□□ 0.02
TRIM28-209ENST00000597423 ARL8AQ96BM9 186 aa15.19■□□□□ 0.02
TRIM28-209ENST00000597423 ERLEC1Q96DZ1 483 aa15.19■□□□□ 0.02
TRIM28-209ENST00000597423 MRGPRX1Q96LB2 322 aa15.19■□□□□ 0.02
TRIM28-209ENST00000597423 RBBP8Q99708 897 aa15.19■□□□□ 0.02
TRIM28-209ENST00000597423 WRAP53Q9BUR4 548 aaKnown RBP15.19■□□□□ 0.02
TRIM28-209ENST00000597423 C1QTNF7Q9BXJ2 289 aa15.19■□□□□ 0.02
TRIM28-209ENST00000597423 ASB8Q9H765 288 aa15.19■□□□□ 0.02
TRIM28-209ENST00000597423 NFKBIL1Q9UBC1 381 aaPredicted RBP15.19■□□□□ 0.02
TRIM28-209ENST00000597423 MUTYHQ9UIF7 546 aa15.19■□□□□ 0.02
TRIM28-209ENST00000597423 GGT7Q9UJ14 662 aa15.19■□□□□ 0.02
TRIM28-209ENST00000597423 SIT1Q9Y3P8 196 aa15.19■□□□□ 0.02
TRIM28-209ENST00000597423 ACTL7BQ9Y614 415 aa15.19■□□□□ 0.02
TRIM28-209ENST00000597423 C5orf42Q9H799 3197 aa15.18■□□□□ 0.02
TRIM28-209ENST00000597423 COL4A2P08572 1712 aa15.18■□□□□ 0.02
TRIM28-209ENST00000597423 F8W8V4 182 aa15.18■□□□□ 0.02
TRIM28-209ENST00000597423 S1PR4O95977 384 aa15.18■□□□□ 0.02
TRIM28-209ENST00000597423 PYGLP06737 847 aa15.18■□□□□ 0.02
TRIM28-209ENST00000597423 ITGA2BP08514 1039 aa15.18■□□□□ 0.02
TRIM28-209ENST00000597423 C1SP09871 688 aa15.18■□□□□ 0.02
TRIM28-209ENST00000597423 DRD3P35462 400 aa15.18■□□□□ 0.02
TRIM28-209ENST00000597423 SLC1A2P43004 574 aa15.18■□□□□ 0.02
TRIM28-209ENST00000597423 PTGER3P43115 390 aa15.18■□□□□ 0.02
TRIM28-209ENST00000597423 MAGEA9P43362 315 aa15.18■□□□□ 0.02
TRIM28-209ENST00000597423 RPS9P46781 194 aaKnown RBP15.18■□□□□ 0.02
TRIM28-209ENST00000597423 CLCN5P51795 746 aa15.18■□□□□ 0.02
TRIM28-209ENST00000597423 METAP1P53582 386 aa15.18■□□□□ 0.02
TRIM28-209ENST00000597423 LIMK2P53671 638 aa15.18■□□□□ 0.02
TRIM28-209ENST00000597423 SLC12A2P55011 1212 aa15.18■□□□□ 0.02
TRIM28-209ENST00000597423 RPS21P63220 83 aaKnown RBP15.18■□□□□ 0.02
TRIM28-209ENST00000597423 ZXDAP98168 799 aa15.18■□□□□ 0.02
TRIM28-209ENST00000597423 XIAPP98170 497 aa15.18■□□□□ 0.02
TRIM28-209ENST00000597423 CREB5Q02930 508 aa15.18■□□□□ 0.02
TRIM28-209ENST00000597423 SGCGQ13326 291 aa15.18■□□□□ 0.02
TRIM28-209ENST00000597423 NFATC2Q13469 925 aa15.18■□□□□ 0.02
TRIM28-209ENST00000597423 PEX6Q13608 980 aa15.18■□□□□ 0.02
TRIM28-209ENST00000597423 CHRNA6Q15825 494 aa15.18■□□□□ 0.02
TRIM28-209ENST00000597423 MROH9Q5TGP6 573 aa15.18■□□□□ 0.02
TRIM28-209ENST00000597423 FAM151BQ6UXP7 276 aa15.18■□□□□ 0.02
TRIM28-209ENST00000597423 TMEM92Q6UXU6 159 aa15.18■□□□□ 0.02
TRIM28-209ENST00000597423 TIFABQ6ZNK6 161 aa15.18■□□□□ 0.02
TRIM28-209ENST00000597423 ZNF765Q7L2R6 523 aa15.18■□□□□ 0.02
TRIM28-209ENST00000597423 TECPR1Q7Z6L1 1165 aa15.18■□□□□ 0.02
TRIM28-209ENST00000597423 DENND6AQ8IWF6 608 aa15.18■□□□□ 0.02
TRIM28-209ENST00000597423 TRAM1L1Q8N609 369 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms