RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 HDAC3O15379 428 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 SMIM24O75264 130 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 VPS26AO75436 327 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 CBX6O95503 412 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 ESR1P03372 595 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 CA3P07451 260 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 ESRRAP11474 423 aaPredicted RBP14.14□□□□□ -0.15
LIG3-205ENST00000585941 PKMP14618 531 aaKnown RBP14.14□□□□□ -0.15
LIG3-205ENST00000585941 TFEBP19484 476 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 IDH3AP50213 366 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 NFKB2Q00653 900 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 GALNT1Q10472 559 aaPredicted RBP14.14□□□□□ -0.15
LIG3-205ENST00000585941 PEX6Q13608 980 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 ARL13AQ5H913 290 aaPredicted RBP14.14□□□□□ -0.15
LIG3-205ENST00000585941 UGT3A1Q6NUS8 523 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 CYB5D1Q6P9G0 228 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 EPGNQ6UW88 154 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 TRIM67Q6ZTA4 783 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 LYSMD3Q7Z3D4 306 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 KIAA0907Q7Z7F0 614 aaPredicted RBP14.14□□□□□ -0.15
LIG3-205ENST00000585941 ISCA2Q86U28 154 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 ALYREFQ86V81 257 aaKnown RBP14.14□□□□□ -0.15
LIG3-205ENST00000585941 ADGRG2Q8IZP9 1017 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 AHI1Q8N157 1196 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 CBARPQ8N350 705 aaPredicted RBP14.14□□□□□ -0.15
LIG3-205ENST00000585941 SPATA6LQ8N4H0 392 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 AFAP1L2Q8N4X5 818 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 NKAPQ8N5F7 415 aaKnown RBP14.14□□□□□ -0.15
LIG3-205ENST00000585941 ZNF781Q8N8C0 355 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 TXNDC5Q8NBS9 432 aaKnown RBP14.14□□□□□ -0.15
LIG3-205ENST00000585941 ANKRD49Q8WVL7 239 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 PTCD3Q96EY7 689 aaKnown RBP14.14□□□□□ -0.15
LIG3-205ENST00000585941 LMAN2LQ9H0V9 348 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 TFB2MQ9H5Q4 396 aaKnown RBP14.14□□□□□ -0.15
LIG3-205ENST00000585941 HECAQ9UBI9 543 aaPredicted RBP14.14□□□□□ -0.15
LIG3-205ENST00000585941 PPIL1Q9Y3C6 166 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 PCDHB1Q9Y5F3 818 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 CAPN14A8MX76 684 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 MATN2O00339 956 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 PIGNO95427 931 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 TPBGLP0DKB5 382 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 MYOGP15173 224 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 CD1DP15813 335 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 CEBPBP17676 345 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 CTPS1P17812 591 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 FMO4P31512 558 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 VASPP50552 380 aaPredicted RBP14.14□□□□□ -0.15
LIG3-205ENST00000585941 NAA20P61599 178 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 ELF3P78545 371 aaPredicted RBP14.14□□□□□ -0.15
LIG3-205ENST00000585941 NTHL1P78549 312 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 XIAPP98170 497 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 TIAL1Q01085 375 aaKnown RBP eCLIP14.14□□□□□ -0.15
LIG3-205ENST00000585941 PTPRNQ16849 979 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 CARD16Q5EG05 197 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 LY6G5CQ5SRR4 150 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 SEL1L3Q68CR1 1132 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 TMEM207Q6UWW9 146 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 USP45Q70EL2 814 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 CCNYL1Q8N7R7 359 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 OR6K2Q8NGY2 324 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 RIN3Q8TB24 985 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 SMG7Q92540 1137 aaKnown RBP14.14□□□□□ -0.15
LIG3-205ENST00000585941 SLC7A6OSQ96CW6 309 aaPredicted RBP14.14□□□□□ -0.15
LIG3-205ENST00000585941 ECHDC3Q96DC8 303 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 FAR2Q96K12 515 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 RPL10LQ96L21 214 aaKnown RBP14.14□□□□□ -0.15
LIG3-205ENST00000585941 DERL2Q9GZP9 239 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 TNKS2Q9H2K2 1166 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 SUV39H2Q9H5I1 410 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 KLC4Q9NSK0 619 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 ARL8BQ9NVJ2 186 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 SLC8A2Q9UPR5 921 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 OAS3Q9Y6K5 1087 aaKnown RBP14.14□□□□□ -0.15
LIG3-205ENST00000585941 NUMBLQ9Y6R0 609 aa14.14□□□□□ -0.15
LIG3-205ENST00000585941 SCN8AQ9UQD0 1980 aa14.13□□□□□ -0.15
LIG3-205ENST00000585941 C1orf232A0A0U1RR37 186 aa14.13□□□□□ -0.15
LIG3-205ENST00000585941 A8MT66 165 aa14.13□□□□□ -0.15
LIG3-205ENST00000585941 MGRN1O60291 552 aa14.13□□□□□ -0.15
LIG3-205ENST00000585941 DIAPH2O60879 1101 aa14.13□□□□□ -0.15
LIG3-205ENST00000585941 ARHGEF15O94989 841 aa14.13□□□□□ -0.15
LIG3-205ENST00000585941 POLR2EP19388 210 aaKnown RBP14.13□□□□□ -0.15
LIG3-205ENST00000585941 AOC1P19801 751 aa14.13□□□□□ -0.15
LIG3-205ENST00000585941 ITGALP20701 1170 aa14.13□□□□□ -0.15
LIG3-205ENST00000585941 IMPDH1P20839 514 aa14.13□□□□□ -0.15
LIG3-205ENST00000585941 NNMTP40261 264 aa14.13□□□□□ -0.15
LIG3-205ENST00000585941 CTSOP43234 321 aaPredicted RBP14.13□□□□□ -0.15
LIG3-205ENST00000585941 RECQLP46063 649 aaPredicted RBP14.13□□□□□ -0.15
LIG3-205ENST00000585941 STK19P49842 368 aaPredicted RBP14.13□□□□□ -0.15
LIG3-205ENST00000585941 POLR2LP62875 67 aaKnown RBP14.13□□□□□ -0.15
LIG3-205ENST00000585941 KCNJ2P63252 427 aa14.13□□□□□ -0.15
LIG3-205ENST00000585941 TUBB3Q13509 450 aa14.13□□□□□ -0.15
LIG3-205ENST00000585941 RIPK1Q13546 671 aa14.13□□□□□ -0.15
LIG3-205ENST00000585941 GPR33Q49SQ1 333 aa14.13□□□□□ -0.15
LIG3-205ENST00000585941 ZDHHC20Q5W0Z9 365 aa14.13□□□□□ -0.15
LIG3-205ENST00000585941 FBXW10Q5XX13 1052 aa14.13□□□□□ -0.15
LIG3-205ENST00000585941 ASTLQ6HA08 431 aaPredicted RBP14.13□□□□□ -0.15
LIG3-205ENST00000585941 GRAMD4Q6IC98 578 aa14.13□□□□□ -0.15
LIG3-205ENST00000585941 PSAPL1Q6NUJ1 521 aa14.13□□□□□ -0.15
LIG3-205ENST00000585941 ATG14Q6ZNE5 492 aa14.13□□□□□ -0.15
LIG3-205ENST00000585941 RAB44Q7Z6P3 723 aaPredicted RBP14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms