RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 TEAD1P28347 426 aa20.42■□□□□ 0.86
SHMT1-209ENST00000582653 CDK3Q00526 305 aa20.42■□□□□ 0.86
SHMT1-209ENST00000582653 NIPAL4Q0D2K0 466 aa20.42■□□□□ 0.86
SHMT1-209ENST00000582653 CLN3Q13286 438 aa20.42■□□□□ 0.86
SHMT1-209ENST00000582653 TAF1BQ53T94 588 aaPredicted RBP20.42■□□□□ 0.86
SHMT1-209ENST00000582653 LRRC66Q68CR7 880 aa20.42■□□□□ 0.86
SHMT1-209ENST00000582653 RAET1GQ6H3X3 334 aa20.42■□□□□ 0.86
SHMT1-209ENST00000582653 C17orf82Q86X59 251 aaPredicted RBP20.42■□□□□ 0.86
SHMT1-209ENST00000582653 CCNYQ8ND76 341 aa20.42■□□□□ 0.86
SHMT1-209ENST00000582653 ARRDC2Q8TBH0 407 aa20.42■□□□□ 0.86
SHMT1-209ENST00000582653 TSPY26PQ9H489 355 aa20.42■□□□□ 0.86
SHMT1-209ENST00000582653 SPATS2LQ9NUQ6 558 aaKnown RBP20.42■□□□□ 0.86
SHMT1-209ENST00000582653 TRNAU1APQ9NX07 287 aaKnown RBP20.42■□□□□ 0.86
SHMT1-209ENST00000582653 DTLQ9NZJ0 730 aa20.42■□□□□ 0.86
SHMT1-209ENST00000582653 EIF2AK3Q9NZJ5 1116 aaKnown RBP20.42■□□□□ 0.86
SHMT1-209ENST00000582653 KALRNO60229 2985 aa20.42■□□□□ 0.86
SHMT1-209ENST00000582653 KIF26BQ2KJY2 2108 aa20.41■□□□□ 0.86
SHMT1-209ENST00000582653 FGF1P05230 155 aa20.41■□□□□ 0.86
SHMT1-209ENST00000582653 HLA-DQB2P05538 268 aa20.41■□□□□ 0.86
SHMT1-209ENST00000582653 SLC5A2P31639 672 aa20.41■□□□□ 0.86
SHMT1-209ENST00000582653 MAN1A1P33908 653 aa20.41■□□□□ 0.86
SHMT1-209ENST00000582653 B4GALNT1Q00973 533 aa20.41■□□□□ 0.86
SHMT1-209ENST00000582653 PTSQ03393 145 aa20.41■□□□□ 0.86
SHMT1-209ENST00000582653 DPTQ07507 201 aa20.41■□□□□ 0.86
SHMT1-209ENST00000582653 ALG1LQ6GMV1 187 aa20.41■□□□□ 0.86
SHMT1-209ENST00000582653 CCDC81Q6ZN84 652 aa20.41■□□□□ 0.86
SHMT1-209ENST00000582653 SPRED1Q7Z699 444 aa20.41■□□□□ 0.86
SHMT1-209ENST00000582653 NRROSQ86YC3 692 aa20.41■□□□□ 0.86
SHMT1-209ENST00000582653 NDUFAF2Q8N183 169 aa20.41■□□□□ 0.86
SHMT1-209ENST00000582653 KIAA1524Q8TCG1 905 aa20.41■□□□□ 0.86
SHMT1-209ENST00000582653 SCAMP4Q969E2 229 aa20.41■□□□□ 0.86
SHMT1-209ENST00000582653 TMEM159Q96B96 161 aa20.41■□□□□ 0.86
SHMT1-209ENST00000582653 RNF157Q96PX1 679 aa20.41■□□□□ 0.86
SHMT1-209ENST00000582653 FRMD8Q9BZ67 464 aaPredicted RBP20.41■□□□□ 0.86
SHMT1-209ENST00000582653 ABCG8Q9H221 673 aa20.41■□□□□ 0.86
SHMT1-209ENST00000582653 NHEJ1Q9H9Q4 299 aaPredicted RBP20.41■□□□□ 0.86
SHMT1-209ENST00000582653 ACSL6Q9UKU0 697 aa20.41■□□□□ 0.86
SHMT1-209ENST00000582653 ATXN7L1Q9ULK2 861 aaPredicted RBP20.41■□□□□ 0.86
SHMT1-209ENST00000582653 SUFUQ9UMX1 484 aa20.41■□□□□ 0.86
SHMT1-209ENST00000582653 A0A0J9YYE9 177 aa20.4■□□□□ 0.86
SHMT1-209ENST00000582653 NVLO15381 856 aaKnown RBP20.4■□□□□ 0.86
SHMT1-209ENST00000582653 B4GAT1O43505 415 aa20.4■□□□□ 0.86
SHMT1-209ENST00000582653 MFAP3LO75121 409 aa20.4■□□□□ 0.86
SHMT1-209ENST00000582653 PRLP01236 227 aa20.4■□□□□ 0.86
SHMT1-209ENST00000582653 TRBC1P01850 177 aa20.4■□□□□ 0.86
SHMT1-209ENST00000582653 GPR1P46091 355 aa20.4■□□□□ 0.86
SHMT1-209ENST00000582653 GNPDA1P46926 289 aa20.4■□□□□ 0.86
SHMT1-209ENST00000582653 EPHB1P54762 984 aa20.4■□□□□ 0.86
SHMT1-209ENST00000582653 DOK6Q6PKX4 331 aa20.4■□□□□ 0.86
SHMT1-209ENST00000582653 ZNF605Q86T29 641 aa20.4■□□□□ 0.86
SHMT1-209ENST00000582653 NLRP8Q86W28 1048 aa20.4■□□□□ 0.86
SHMT1-209ENST00000582653 CCDC13Q8IYE1 715 aa20.4■□□□□ 0.86
SHMT1-209ENST00000582653 TTC9Q92623 222 aa20.4■□□□□ 0.86
SHMT1-209ENST00000582653 FATE1Q969F0 183 aa20.4■□□□□ 0.86
SHMT1-209ENST00000582653 CCDC42Q96M95 316 aa20.4■□□□□ 0.86
SHMT1-209ENST00000582653 AGAP2Q99490 1192 aa20.4■□□□□ 0.86
SHMT1-209ENST00000582653 TDRD1Q9BXT4 1180 aaKnown RBP20.4■□□□□ 0.86
SHMT1-209ENST00000582653 GSDMCQ9BYG8 508 aa20.4■□□□□ 0.86
SHMT1-209ENST00000582653 LCMT1Q9UIC8 334 aa20.4■□□□□ 0.86
SHMT1-209ENST00000582653 ST14Q9Y5Y6 855 aa20.4■□□□□ 0.86
SHMT1-209ENST00000582653 ATMQ13315 3056 aa20.4■□□□□ 0.86
SHMT1-209ENST00000582653 LRRD1A4D1F6 860 aa20.39■□□□□ 0.85
SHMT1-209ENST00000582653 KCNK1O00180 336 aa20.39■□□□□ 0.85
SHMT1-209ENST00000582653 SOD1P00441 154 aa20.39■□□□□ 0.85
SHMT1-209ENST00000582653 JCHAINP01591 159 aa20.39■□□□□ 0.85
SHMT1-209ENST00000582653 JMJD7P0C870 316 aa20.39■□□□□ 0.85
SHMT1-209ENST00000582653 KRT10P13645 584 aa20.39■□□□□ 0.85
SHMT1-209ENST00000582653 HGFP14210 728 aa20.39■□□□□ 0.85
SHMT1-209ENST00000582653 MX2P20592 715 aa20.39■□□□□ 0.85
SHMT1-209ENST00000582653 CES1P23141 567 aa20.39■□□□□ 0.85
SHMT1-209ENST00000582653 AK4P27144 223 aaPredicted RBP20.39■□□□□ 0.85
SHMT1-209ENST00000582653 ILF3Q12906 894 aaKnown RBP eCLIP20.39■□□□□ 0.856e-6■□□□□ 10.2
SHMT1-209ENST00000582653 PLD5Q8N7P1 536 aa20.39■□□□□ 0.85
SHMT1-209ENST00000582653 AP2M1Q96CW1 435 aa20.39■□□□□ 0.85
SHMT1-209ENST00000582653 HDAC11Q96DB2 347 aa20.39■□□□□ 0.85
SHMT1-209ENST00000582653 CCNL2Q96S94 520 aaPredicted RBP20.39■□□□□ 0.85
SHMT1-209ENST00000582653 CMKLR1Q99788 373 aa20.39■□□□□ 0.85
SHMT1-209ENST00000582653 AMACRQ9UHK6 382 aa20.39■□□□□ 0.85
SHMT1-209ENST00000582653 SLC17A4Q9Y2C5 497 aa20.39■□□□□ 0.85
SHMT1-209ENST00000582653 TMEM98Q9Y2Y6 226 aa20.39■□□□□ 0.85
SHMT1-209ENST00000582653 PLEKHM1Q9Y4G2 1056 aa20.39■□□□□ 0.85
SHMT1-209ENST00000582653 HEY1Q9Y5J3 304 aa20.39■□□□□ 0.85
SHMT1-209ENST00000582653 C3orf70A6NLC5 250 aaPredicted RBP20.38■□□□□ 0.85
SHMT1-209ENST00000582653 AGRPO00253 132 aa20.38■□□□□ 0.85
SHMT1-209ENST00000582653 EFSO43281 561 aa20.38■□□□□ 0.85
SHMT1-209ENST00000582653 CLDN7O95471 211 aa20.38■□□□□ 0.85
SHMT1-209ENST00000582653 TPM1P09493 284 aa20.38■□□□□ 0.85
SHMT1-209ENST00000582653 MAZP56270 477 aaKnown RBP20.38■□□□□ 0.85
SHMT1-209ENST00000582653 PEX6Q13608 980 aa20.38■□□□□ 0.85
SHMT1-209ENST00000582653 TRIM74Q86UV6 250 aa20.38■□□□□ 0.85
SHMT1-209ENST00000582653 PIM3Q86V86 326 aa20.38■□□□□ 0.85
SHMT1-209ENST00000582653 CNTD1Q8N815 330 aa20.38■□□□□ 0.85
SHMT1-209ENST00000582653 LPCAT1Q8NF37 534 aa20.38■□□□□ 0.85
SHMT1-209ENST00000582653 ZDHHC1Q8WTX9 485 aa20.38■□□□□ 0.85
SHMT1-209ENST00000582653 SCARF2Q96GP6 870 aaPredicted RBP20.38■□□□□ 0.85
SHMT1-209ENST00000582653 CEP41Q9BYV8 373 aa20.38■□□□□ 0.85
SHMT1-209ENST00000582653 PCDH9Q9HC56 1237 aa20.38■□□□□ 0.85
SHMT1-209ENST00000582653 TAAR2Q9P1P5 351 aa20.38■□□□□ 0.85
SHMT1-209ENST00000582653 LOXL2Q9Y4K0 774 aa20.38■□□□□ 0.85
SHMT1-209ENST00000582653 HYOU1Q9Y4L1 999 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms