RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 TERB1Q8NA31 727 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 CCDC63Q8NA47 563 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 KCTD4Q8WVF5 259 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 TSNARE1Q96NA8 513 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 OLFM1Q99784 485 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 OMDQ99983 421 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 RPP25Q9BUL9 199 aaKnown RBP10.5□□□□□ -0.73
SS18-217ENST00000580958 MECRQ9BV79 373 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 C1QTNF1Q9BXJ1 281 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 MANSC1Q9H8J5 431 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 PLA2G2EQ9NZK7 142 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 TMEM216Q9P0N5 145 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 IL36AQ9UHA7 158 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 CRYL1Q9Y2S2 319 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 PPIL1Q9Y3C6 166 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 A0A087X1B8 175 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 A0A1W2PQ67 120 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 UBA6A0AVT1 1052 aaPredicted RBP10.49□□□□□ -0.73
SS18-217ENST00000580958 TSPAN11A1L157 253 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 H7C0S8 307 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 NDUFS3O75489 264 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 LEFTY1O75610 366 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 CTSLP07711 333 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 HLA-EP13747 358 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 IGFBP4P22692 258 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 HMGCLP35914 325 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 CDKN2DP55273 166 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 XIAPP98170 497 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 EIF4HQ15056 248 aaKnown RBP10.49□□□□□ -0.73
SS18-217ENST00000580958 ZSCAN26Q16670 478 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 LRRC73Q5JTD7 316 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 FAM45BPQ6NSW5 357 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 PSAPL1Q6NUJ1 521 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 ZNF549Q6P9A3 640 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 CRTC1Q6UUV9 634 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 USP45Q70EL2 814 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 TAS2R42Q7RTR8 314 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 NUDCD3Q8IVD9 361 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 TRIM42Q8IWZ5 723 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 PIANPQ8IYJ0 282 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 FAM45AQ8TCE6 357 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 LPGAT1Q92604 370 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 TSPAN17Q96FV3 270 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 SEC16BQ96JE7 1060 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 SCYL1Q96KG9 808 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 MCCC1Q96RQ3 725 aaPredicted RBP10.49□□□□□ -0.73
SS18-217ENST00000580958 LYSMD1Q96S90 227 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 ELAC2Q9BQ52 826 aaKnown RBP10.49□□□□□ -0.73
SS18-217ENST00000580958 AARSD1Q9BTE6 412 aaKnown RBP10.49□□□□□ -0.73
SS18-217ENST00000580958 BRD9Q9H8M2 597 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 SLCO1B3Q9NPD5 702 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 INTS10Q9NVR2 710 aaKnown RBP10.49□□□□□ -0.73
SS18-217ENST00000580958 B4GALT6Q9UBX8 382 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 CORO1CQ9ULV4 474 aaPredicted RBP10.49□□□□□ -0.73
SS18-217ENST00000580958 PLA2G4CQ9UP65 541 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 RUVBL2Q9Y230 463 aaKnown RBP10.49□□□□□ -0.73
SS18-217ENST00000580958 VPS9D1Q9Y2B5 631 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 ACOT9Q9Y305 439 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 VWA7Q9Y334 891 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 SLC30A1Q9Y6M5 507 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 BPTFQ12830 3046 aa10.49□□□□□ -0.73
SS18-217ENST00000580958 C5orf42Q9H799 3197 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 EDDM13A0A1B0GTR0 161 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 TBC1D3BA6NDS4 549 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.48□□□□□ -0.73
SS18-217ENST00000580958 GAPDHSO14556 408 aaPredicted RBP10.48□□□□□ -0.73
SS18-217ENST00000580958 BIRC5O15392 142 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 C1SP09871 688 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 CYP2A6P11509 494 aaPredicted RBP10.48□□□□□ -0.73
SS18-217ENST00000580958 COL6A2P12110 1019 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 TIMP2P16035 220 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 BPIP17213 487 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 FDXRP22570 491 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 LHCGRP22888 699 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 ALDH3A1P30838 453 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 FMO4P31512 558 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 SPAM1P38567 509 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 CACNG1Q06432 222 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 ILF2Q12905 390 aaKnown RBP10.48□□□□□ -0.73
SS18-217ENST00000580958 DLG1Q12959 904 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 HTR4Q13639 388 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 ZNF234Q14588 700 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 COL19A1Q14993 1142 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 PCLAFQ15004 111 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 CHI3L2Q15782 390 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 ITPRIPL2Q3MIP1 535 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 LRIT3Q3SXY7 679 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 CCDC153Q494R4 210 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 LRRC66Q68CR7 880 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 LRRC8EQ6NSJ5 796 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 CGB2Q6NT52 195 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 BRAT1Q6PJG6 821 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 FAM151BQ6UXP7 276 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 MTSS1LQ765P7 747 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 PIGWQ7Z7B1 504 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 CENPLQ8N0S6 344 aaPredicted RBP10.48□□□□□ -0.73
SS18-217ENST00000580958 STK40Q8N2I9 435 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 UCMAQ8WVF2 138 aa10.48□□□□□ -0.73
SS18-217ENST00000580958 SCG3Q8WXD2 468 aaKnown RBP10.48□□□□□ -0.73
SS18-217ENST00000580958 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms