RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 CTPS1P17812 591 aa20.57■□□□□ 0.88
VPS53-210ENST00000571456 TPSB2P20231 275 aa20.57■□□□□ 0.88
VPS53-210ENST00000571456 MAT2AP31153 395 aaKnown RBP20.57■□□□□ 0.88
VPS53-210ENST00000571456 LAMB3Q13751 1172 aa20.57■□□□□ 0.88
VPS53-210ENST00000571456 TPSAB1Q15661 275 aa20.57■□□□□ 0.88
VPS53-210ENST00000571456 LRRC66Q68CR7 880 aa20.57■□□□□ 0.88
VPS53-210ENST00000571456 CRTC1Q6UUV9 634 aa20.57■□□□□ 0.88
VPS53-210ENST00000571456 ZNF765Q7L2R6 523 aa20.57■□□□□ 0.88
VPS53-210ENST00000571456 DEFB119Q8N690 84 aa20.57■□□□□ 0.88
VPS53-210ENST00000571456 PDCD7Q8N8D1 485 aaKnown RBP20.57■□□□□ 0.88
VPS53-210ENST00000571456 MFSD2AQ8NA29 543 aa20.57■□□□□ 0.88
VPS53-210ENST00000571456 TMEM145Q8NBT3 493 aa20.57■□□□□ 0.88
VPS53-210ENST00000571456 MNS1Q8NEH6 495 aa20.57■□□□□ 0.88
VPS53-210ENST00000571456 SPATA4Q8NEY3 305 aa20.57■□□□□ 0.88
VPS53-210ENST00000571456 ZNF592Q92610 1267 aa20.57■□□□□ 0.88
VPS53-210ENST00000571456 ZDHHC5Q9C0B5 715 aa20.57■□□□□ 0.88
VPS53-210ENST00000571456 MIR1-1HGQ9H1L0 117 aa20.57■□□□□ 0.88
VPS53-210ENST00000571456 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP20.57■□□□□ 0.88
VPS53-210ENST00000571456 PKD2L2Q9NZM6 624 aa20.57■□□□□ 0.88
VPS53-210ENST00000571456 NFKBIL1Q9UBC1 381 aaPredicted RBP20.57■□□□□ 0.88
VPS53-210ENST00000571456 TK2O00142 265 aa20.56■□□□□ 0.88
VPS53-210ENST00000571456 PDE2AO00408 941 aaPredicted RBP20.56■□□□□ 0.88
VPS53-210ENST00000571456 WNT9AO14904 365 aa20.56■□□□□ 0.88
VPS53-210ENST00000571456 SH3BP5O60239 455 aa20.56■□□□□ 0.88
VPS53-210ENST00000571456 C1QL1O75973 258 aa20.56■□□□□ 0.88
VPS53-210ENST00000571456 PAK4O96013 591 aaPredicted RBP20.56■□□□□ 0.88
VPS53-210ENST00000571456 ALPIP09923 528 aa20.56■□□□□ 0.88
VPS53-210ENST00000571456 ITIH2P19823 946 aa20.56■□□□□ 0.88
VPS53-210ENST00000571456 LHCGRP22888 699 aa20.56■□□□□ 0.88
VPS53-210ENST00000571456 TEAD1P28347 426 aa20.56■□□□□ 0.88
VPS53-210ENST00000571456 HMGCLP35914 325 aa20.56■□□□□ 0.88
VPS53-210ENST00000571456 MAGEA6P43360 314 aa20.56■□□□□ 0.88
VPS53-210ENST00000571456 STC1P52823 247 aa20.56■□□□□ 0.88
VPS53-210ENST00000571456 CDH17Q12864 832 aa20.56■□□□□ 0.88
VPS53-210ENST00000571456 SLC14A1Q13336 389 aa20.56■□□□□ 0.88
VPS53-210ENST00000571456 LRRC14Q15048 493 aa20.56■□□□□ 0.88
VPS53-210ENST00000571456 ACOX1Q15067 660 aa20.56■□□□□ 0.88
VPS53-210ENST00000571456 KDELC2Q7Z4H8 507 aa20.56■□□□□ 0.88
VPS53-210ENST00000571456 MAATS1Q7Z4T9 603 aa20.56■□□□□ 0.88
VPS53-210ENST00000571456 PCGF5Q86SE9 256 aa20.56■□□□□ 0.88
VPS53-210ENST00000571456 OR2I1PQ8NGU4 316 aa20.56■□□□□ 0.88
VPS53-210ENST00000571456 COQ10AQ96MF6 247 aa20.56■□□□□ 0.88
VPS53-210ENST00000571456 TM9SF3Q9HD45 589 aa20.56■□□□□ 0.88
VPS53-210ENST00000571456 DNAAF2Q9NVR5 837 aaKnown RBP20.56■□□□□ 0.88
VPS53-210ENST00000571456 NEU2Q9Y3R4 380 aa20.56■□□□□ 0.88
VPS53-210ENST00000571456 ZNF711Q9Y462 761 aa20.56■□□□□ 0.88
VPS53-210ENST00000571456 KNTC1P50748 2209 aa20.55■□□□□ 0.88
VPS53-210ENST00000571456 SMAPO00193 183 aa20.55■□□□□ 0.88
VPS53-210ENST00000571456 ARHGAP33O14559 1287 aa20.55■□□□□ 0.88
VPS53-210ENST00000571456 VILLO15195 856 aa20.55■□□□□ 0.88
VPS53-210ENST00000571456 SLC31A1O15431 190 aa20.55■□□□□ 0.88
VPS53-210ENST00000571456 RECQL5O94762 991 aaPredicted RBP20.55■□□□□ 0.88
VPS53-210ENST00000571456 CRTAMO95727 393 aa20.55■□□□□ 0.88
VPS53-210ENST00000571456 AGTP01019 485 aa20.55■□□□□ 0.88
VPS53-210ENST00000571456 PRKCGP05129 697 aa20.55■□□□□ 0.88
VPS53-210ENST00000571456 APRTP07741 180 aa20.55■□□□□ 0.88
VPS53-210ENST00000571456 SYPP08247 313 aa20.55■□□□□ 0.88
VPS53-210ENST00000571456 PLA2G2AP14555 144 aa20.55■□□□□ 0.88
VPS53-210ENST00000571456 ETS1P14921 441 aa20.55■□□□□ 0.88
VPS53-210ENST00000571456 CD38P28907 300 aa20.55■□□□□ 0.88
VPS53-210ENST00000571456 YPEL5P62699 121 aa20.55■□□□□ 0.88
VPS53-210ENST00000571456 BASP1P80723 227 aaKnown RBP20.55■□□□□ 0.88
VPS53-210ENST00000571456 DR1Q01658 176 aa20.55■□□□□ 0.88
VPS53-210ENST00000571456 DPTQ07507 201 aa20.55■□□□□ 0.88
VPS53-210ENST00000571456 GPS1Q13098 491 aa20.55■□□□□ 0.88
VPS53-210ENST00000571456 PTK6Q13882 451 aa20.55■□□□□ 0.88
VPS53-210ENST00000571456 CDKN3Q16667 212 aa20.55■□□□□ 0.88
VPS53-210ENST00000571456 IL27RAQ6UWB1 636 aa20.55■□□□□ 0.88
VPS53-210ENST00000571456 KYAT3Q6YP21 454 aaKnown RBP20.55■□□□□ 0.88
VPS53-210ENST00000571456 TMC3Q7Z5M5 1100 aa20.55■□□□□ 0.88
VPS53-210ENST00000571456 ZCCHC9Q8N567 271 aaKnown RBP20.55■□□□□ 0.88
VPS53-210ENST00000571456 GLIS1Q8NBF1 620 aa20.55■□□□□ 0.88
VPS53-210ENST00000571456 DTX3LQ8TDB6 740 aa20.55■□□□□ 0.88
VPS53-210ENST00000571456 BRSK1Q8TDC3 778 aa20.55■□□□□ 0.88
VPS53-210ENST00000571456 SLC39A7Q92504 469 aa20.55■□□□□ 0.88
VPS53-210ENST00000571456 CENPTQ96BT3 561 aa20.55■□□□□ 0.88
VPS53-210ENST00000571456 DTD2Q96FN9 168 aa20.55■□□□□ 0.88
VPS53-210ENST00000571456 KLF6Q99612 283 aaPredicted RBP20.55■□□□□ 0.88
VPS53-210ENST00000571456 GPR63Q9BZJ6 419 aa20.55■□□□□ 0.88
VPS53-210ENST00000571456 AASDHPPTQ9NRN7 309 aa20.55■□□□□ 0.88
VPS53-210ENST00000571456 APOBEC2Q9Y235 224 aaKnown RBP20.55■□□□□ 0.88
VPS53-210ENST00000571456 C2orf81A6NN90 581 aa20.54■□□□□ 0.88
VPS53-210ENST00000571456 A6NNZ2 444 aa20.54■□□□□ 0.88
VPS53-210ENST00000571456 F5H423 210 aaPredicted RBP20.54■□□□□ 0.88
VPS53-210ENST00000571456 ZSCAN5DPP0CG00 497 aa20.54■□□□□ 0.88
VPS53-210ENST00000571456 MAOBP27338 520 aa20.54■□□□□ 0.88
VPS53-210ENST00000571456 RABIFP47224 123 aa20.54■□□□□ 0.88
VPS53-210ENST00000571456 DCDC1P59894 354 aa20.54■□□□□ 0.88
VPS53-210ENST00000571456 PTSQ03393 145 aa20.54■□□□□ 0.88
VPS53-210ENST00000571456 MTM1Q13496 603 aa20.54■□□□□ 0.88
VPS53-210ENST00000571456 FGL2Q14314 439 aa20.54■□□□□ 0.88
VPS53-210ENST00000571456 ESRP1Q6NXG1 681 aaKnown RBP20.54■□□□□ 0.88
VPS53-210ENST00000571456 PPP1R21Q6ZMI0 780 aa20.54■□□□□ 0.88
VPS53-210ENST00000571456 TECPR1Q7Z6L1 1165 aa20.54■□□□□ 0.88
VPS53-210ENST00000571456 ABI3BPQ7Z7G0 1075 aa20.54■□□□□ 0.88
VPS53-210ENST00000571456 SLC25A41Q8N5S1 370 aa20.54■□□□□ 0.88
VPS53-210ENST00000571456 NUS1Q96E22 293 aa20.54■□□□□ 0.88
VPS53-210ENST00000571456 CRELD1Q96HD1 420 aa20.54■□□□□ 0.88
VPS53-210ENST00000571456 EBF2Q9HAK2 575 aa20.54■□□□□ 0.88
VPS53-210ENST00000571456 MRFAP1Q9Y605 127 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms