RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 STC1P52823 247 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 SFSWAPQ12872 951 aaKnown RBP7.96□□□□□ -1.14
VPS39-213ENST00000570062 RUNX3Q13761 415 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 BMPR2Q13873 1038 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 ARHGEF7Q14155 803 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 MPP2Q14168 576 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 LRRC14Q15048 493 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 ACAP2Q15057 778 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 ZKSCAN8Q15776 578 aaPredicted RBP7.96□□□□□ -1.14
VPS39-213ENST00000570062 LRIT3Q3SXY7 679 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 FUT11Q495W5 492 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 DGKKQ5KSL6 1271 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 FAM46CQ5VWP2 391 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 TTC19Q6DKK2 380 aaPredicted RBP7.96□□□□□ -1.14
VPS39-213ENST00000570062 ERAP2Q6P179 960 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 SYCE2Q6PIF2 218 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 Q7L0L9 218 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 GET4Q7L5D6 327 aaPredicted RBP7.96□□□□□ -1.14
VPS39-213ENST00000570062 PTAR1Q7Z6K3 402 aaPredicted RBP7.96□□□□□ -1.14
VPS39-213ENST00000570062 ETFBKMTQ8IXQ9 262 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 MICALL1Q8N3F8 863 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 NKAPQ8N5F7 415 aaKnown RBP7.96□□□□□ -1.14
VPS39-213ENST00000570062 DEFB123Q8N688 67 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 C12orf76Q8N812 135 aaPredicted RBP7.96□□□□□ -1.14
VPS39-213ENST00000570062 TMIEQ8NEW7 156 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 OR4K2Q8NGD2 314 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 WFDC5Q8TCV5 224 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 PPP4R1Q8TF05 950 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 ING5Q8WYH8 240 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 ULK4Q96C45 1275 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 MSANTD3Q96H12 275 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 PPP1R16AQ96I34 528 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 EXOC2Q96KP1 924 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 TBATAQ96M53 351 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 ZNF778Q96MU6 729 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 PLEKHG4BQ96PX9 1271 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 FAM111AQ96PZ2 611 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 MRPL57Q9BQC6 102 aaKnown RBP7.96□□□□□ -1.14
VPS39-213ENST00000570062 TUBB6Q9BUF5 446 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 TRIM55Q9BYV6 548 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 TM6SF2Q9BZW4 377 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 PRO3102Q9H379 93 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 ZNF576Q9H609 170 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 NMRAL1Q9HBL8 299 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 TRPV5Q9NQA5 729 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 MRGBPQ9NV56 204 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 PCMTD2Q9NV79 361 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 THAP1Q9NVV9 213 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 TAS2R13Q9NYV9 303 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 PKD2L2Q9NZM6 624 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 IL17CQ9P0M4 197 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 SIRPGQ9P1W8 387 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 KLHL42Q9P2K6 505 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 IL36AQ9UHA7 158 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 SLC39A10Q9ULF5 831 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 MTO1Q9Y2Z2 717 aaKnown RBP7.96□□□□□ -1.14
VPS39-213ENST00000570062 ZNF711Q9Y462 761 aa7.96□□□□□ -1.14
VPS39-213ENST00000570062 ATXN2Q99700 1313 aaKnown RBP7.96□□□□□ -1.14
VPS39-213ENST00000570062 KIAA1671Q9BY89 1806 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 EDDM13A0A1B0GTR0 161 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 TSPAN11A1L157 253 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 CCDC162PA2VCL2 907 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 TMEM114B3SHH9 223 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 SLCO1B7G3V0H7 640 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 H0Y858 1186 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 PSMD11O00231 422 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 QSOX1O00391 747 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 SMAD6O43541 496 aaKnown RBP7.95□□□□□ -1.14
VPS39-213ENST00000570062 SNX3O60493 162 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 UGT1A9O60656 530 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 PLIN3O60664 434 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 EDF1O60869 148 aaKnown RBP7.95□□□□□ -1.14
VPS39-213ENST00000570062 VPS26AO75436 327 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 PDHA1P08559 390 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 LTA4HP09960 611 aaKnown RBP7.95□□□□□ -1.14
VPS39-213ENST00000570062 LAMP2P13473 410 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 GRIA2P42262 883 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 TNFRSF4P43489 277 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 CSRP3P50461 194 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 SEC24CP53992 1094 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 ATP6V0D1P61421 351 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 DMTNQ08495 405 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 ELP6Q0PNE2 266 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 STX3Q13277 289 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 CTBP1Q13363 440 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 ITGA9Q13797 1035 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 IHHQ14623 411 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 SETDB1Q15047 1291 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 ITPRIPL2Q3MIP1 535 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 ZNF805Q5CZA5 627 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 SPDYAQ5MJ70 313 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 ATXN7L2Q5T6C5 722 aaPredicted RBP7.95□□□□□ -1.14
VPS39-213ENST00000570062 HECTD2Q5U5R9 776 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 LRRC8EQ6NSJ5 796 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 VASH1Q7L8A9 365 aaPredicted RBP7.95□□□□□ -1.14
VPS39-213ENST00000570062 SPATA21Q7Z572 469 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 SNX20Q7Z614 316 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 CLEC14AQ86T13 490 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 CAMK1DQ8IU85 385 aa7.95□□□□□ -1.14
VPS39-213ENST00000570062 CRLF3Q8IUI8 442 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms