RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 PIH1D2Q8WWB5 315 aa16.81■□□□□ 0.28
CLN3-211ENST00000564091 MCCC1Q96RQ3 725 aaPredicted RBP16.81■□□□□ 0.28
CLN3-211ENST00000564091 ABCG8Q9H221 673 aa16.81■□□□□ 0.28
CLN3-211ENST00000564091 MRPL47Q9HD33 250 aaKnown RBP16.81■□□□□ 0.28
CLN3-211ENST00000564091 STARD5Q9NSY2 213 aa16.81■□□□□ 0.28
CLN3-211ENST00000564091 KCTD5Q9NXV2 234 aa16.81■□□□□ 0.28
CLN3-211ENST00000564091 UNC13CQ8NB66 2214 aa16.81■□□□□ 0.28
CLN3-211ENST00000564091 TRBV23OR9-2A0A075B6M9 112 aa16.8■□□□□ 0.28
CLN3-211ENST00000564091 STMND1H3BQB6 276 aa16.8■□□□□ 0.28
CLN3-211ENST00000564091 PSMD11O00231 422 aa16.8■□□□□ 0.28
CLN3-211ENST00000564091 HGSO14964 777 aaPredicted RBP16.8■□□□□ 0.28
CLN3-211ENST00000564091 ZW10O43264 779 aa16.8■□□□□ 0.28
CLN3-211ENST00000564091 SOD1P00441 154 aa16.8■□□□□ 0.28
CLN3-211ENST00000564091 IVLP07476 585 aa16.8■□□□□ 0.28
CLN3-211ENST00000564091 NFKBIAP25963 317 aa16.8■□□□□ 0.28
CLN3-211ENST00000564091 TEAD1P28347 426 aa16.8■□□□□ 0.28
CLN3-211ENST00000564091 MMP13P45452 471 aa16.8■□□□□ 0.28
CLN3-211ENST00000564091 GPR3P46089 330 aa16.8■□□□□ 0.28
CLN3-211ENST00000564091 LIMK2P53671 638 aa16.8■□□□□ 0.28
CLN3-211ENST00000564091 TYRO3Q06418 890 aa16.8■□□□□ 0.28
CLN3-211ENST00000564091 CLPPQ16740 277 aaPredicted RBP16.8■□□□□ 0.28
CLN3-211ENST00000564091 USP45Q70EL2 814 aa16.8■□□□□ 0.28
CLN3-211ENST00000564091 MARK2Q7KZI7 788 aaKnown RBP16.8■□□□□ 0.28
CLN3-211ENST00000564091 SCAMP4Q969E2 229 aa16.8■□□□□ 0.28
CLN3-211ENST00000564091 AP2M1Q96CW1 435 aa16.8■□□□□ 0.28
CLN3-211ENST00000564091 BTBD6Q96KE9 485 aa16.8■□□□□ 0.28
CLN3-211ENST00000564091 TAAR9Q96RI9 348 aa16.8■□□□□ 0.28
CLN3-211ENST00000564091 AGAP2Q99490 1192 aa16.8■□□□□ 0.28
CLN3-211ENST00000564091 B3GNT4Q9C0J1 378 aa16.8■□□□□ 0.28
CLN3-211ENST00000564091 PCDH18Q9HCL0 1135 aa16.8■□□□□ 0.28
CLN3-211ENST00000564091 NT5MQ9NPB1 228 aa16.8■□□□□ 0.28
CLN3-211ENST00000564091 TMEM9Q9P0T7 183 aa16.8■□□□□ 0.28
CLN3-211ENST00000564091 IGHV1OR21-1A0A087WYE8 117 aa16.79■□□□□ 0.28
CLN3-211ENST00000564091 IQCJ-SCHIP1C9J366 451 aaPredicted RBP16.79■□□□□ 0.28
CLN3-211ENST00000564091 MYBL1P10243 752 aa16.79■□□□□ 0.28
CLN3-211ENST00000564091 CSF2RBP32927 897 aa16.79■□□□□ 0.28
CLN3-211ENST00000564091 CDH6P55285 790 aa16.79■□□□□ 0.28
CLN3-211ENST00000564091 PTSQ03393 145 aa16.79■□□□□ 0.28
CLN3-211ENST00000564091 DPTQ07507 201 aa16.79■□□□□ 0.28
CLN3-211ENST00000564091 CLCA4Q14CN2 919 aa16.79■□□□□ 0.28
CLN3-211ENST00000564091 CCDC183Q5T5S1 534 aa16.79■□□□□ 0.28
CLN3-211ENST00000564091 LRRC66Q68CR7 880 aa16.79■□□□□ 0.28
CLN3-211ENST00000564091 ZNF761Q86XN6 746 aaPredicted RBP16.79■□□□□ 0.28
CLN3-211ENST00000564091 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.79■□□□□ 0.28
CLN3-211ENST00000564091 ART4Q93070 314 aa16.79■□□□□ 0.28
CLN3-211ENST00000564091 NKD1Q969G9 470 aa16.79■□□□□ 0.28
CLN3-211ENST00000564091 TRIM11Q96F44 468 aa16.79■□□□□ 0.28
CLN3-211ENST00000564091 SCARF2Q96GP6 870 aaPredicted RBP16.79■□□□□ 0.28
CLN3-211ENST00000564091 NAP1L5Q96NT1 182 aaPredicted RBP16.79■□□□□ 0.28
CLN3-211ENST00000564091 OR2M4Q96R27 311 aa16.79■□□□□ 0.28
CLN3-211ENST00000564091 SEMA3CQ99985 751 aa16.79■□□□□ 0.28
CLN3-211ENST00000564091 ISCUQ9H1K1 167 aa16.79■□□□□ 0.28
CLN3-211ENST00000564091 PPIL1Q9Y3C6 166 aa16.79■□□□□ 0.28
CLN3-211ENST00000564091 PCDHGA3Q9Y5H0 932 aa16.79■□□□□ 0.28
CLN3-211ENST00000564091 B3GALT1Q9Y5Z6 326 aa16.79■□□□□ 0.28
CLN3-211ENST00000564091 FZD6O60353 706 aa16.78■□□□□ 0.28
CLN3-211ENST00000564091 THRAP10827 490 aa16.78■□□□□ 0.28
CLN3-211ENST00000564091 CSRP3P50461 194 aa16.78■□□□□ 0.28
CLN3-211ENST00000564091 ITKQ08881 620 aa16.78■□□□□ 0.28
CLN3-211ENST00000564091 IHHQ14623 411 aa16.78■□□□□ 0.28
CLN3-211ENST00000564091 ANO6Q4KMQ2 910 aa16.78■□□□□ 0.28
CLN3-211ENST00000564091 PYCR3Q53H96 274 aa16.78■□□□□ 0.28
CLN3-211ENST00000564091 RALGPS1Q5JS13 557 aa16.78■□□□□ 0.28
CLN3-211ENST00000564091 ADAMTSL4Q6UY14 1074 aa16.78■□□□□ 0.28
CLN3-211ENST00000564091 AGBL5Q8NDL9 886 aa16.78■□□□□ 0.28
CLN3-211ENST00000564091 OR4D9Q8NGE8 314 aa16.78■□□□□ 0.28
CLN3-211ENST00000564091 GBP4Q96PP9 640 aa16.78■□□□□ 0.28
CLN3-211ENST00000564091 FUCA2Q9BTY2 467 aa16.78■□□□□ 0.28
CLN3-211ENST00000564091 CDH19Q9H159 772 aa16.78■□□□□ 0.28
CLN3-211ENST00000564091 OCIAD1Q9NX40 245 aa16.78■□□□□ 0.28
CLN3-211ENST00000564091 KCNK4Q9NYG8 393 aa16.78■□□□□ 0.28
CLN3-211ENST00000564091 IL17BQ9UHF5 180 aa16.78■□□□□ 0.28
CLN3-211ENST00000564091 TERTO14746 1132 aaKnown RBP16.77■□□□□ 0.28
CLN3-211ENST00000564091 INPP4BO15327 924 aa16.77■□□□□ 0.28
CLN3-211ENST00000564091 ARHGAP6O43182 974 aa16.77■□□□□ 0.28
CLN3-211ENST00000564091 EML2O95834 649 aa16.77■□□□□ 0.28
CLN3-211ENST00000564091 CD48P09326 243 aa16.77■□□□□ 0.28
CLN3-211ENST00000564091 IL4RP24394 825 aa16.77■□□□□ 0.28
CLN3-211ENST00000564091 CSTF2P33240 577 aaKnown RBP eCLIP16.77■□□□□ 0.28
CLN3-211ENST00000564091 SERPINB6P35237 376 aa16.77■□□□□ 0.28
CLN3-211ENST00000564091 UGT1A3P35503 534 aa16.77■□□□□ 0.28
CLN3-211ENST00000564091 PPM1FP49593 454 aaPredicted RBP16.77■□□□□ 0.28
CLN3-211ENST00000564091 SLC25A11Q02978 314 aaKnown RBP16.77■□□□□ 0.28
CLN3-211ENST00000564091 MMRN1Q13201 1228 aa16.77■□□□□ 0.28
CLN3-211ENST00000564091 TRA2AQ13595 282 aaKnown RBP eCLIP16.77■□□□□ 0.28
CLN3-211ENST00000564091 PEX6Q13608 980 aa16.77■□□□□ 0.28
CLN3-211ENST00000564091 PIGHQ14442 188 aaPredicted RBP16.77■□□□□ 0.28
CLN3-211ENST00000564091 KRT81Q14533 505 aa16.77■□□□□ 0.28
CLN3-211ENST00000564091 FILIP1LQ4L180 1135 aa16.77■□□□□ 0.28
CLN3-211ENST00000564091 ATG14Q6ZNE5 492 aa16.77■□□□□ 0.28
CLN3-211ENST00000564091 TEX26Q8N6G2 289 aa16.77■□□□□ 0.28
CLN3-211ENST00000564091 RIOK2Q9BVS4 552 aaKnown RBP16.77■□□□□ 0.28
CLN3-211ENST00000564091 SLC12A9Q9BXP2 914 aa16.77■□□□□ 0.28
CLN3-211ENST00000564091 NAT10Q9H0A0 1025 aaKnown RBP16.77■□□□□ 0.28
CLN3-211ENST00000564091 SLC39A1Q9NY26 324 aa16.77■□□□□ 0.28
CLN3-211ENST00000564091 PRKAB1Q9Y478 270 aa16.77■□□□□ 0.28
CLN3-211ENST00000564091 PCYT1BQ9Y5K3 369 aaPredicted RBP16.77■□□□□ 0.28
CLN3-211ENST00000564091 LRRK1Q38SD2 2015 aa16.77■□□□□ 0.27
CLN3-211ENST00000564091 A0A0J9YYE9 177 aa16.76■□□□□ 0.27
CLN3-211ENST00000564091 SUV39H1O43463 412 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms