RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 TRAPPC12Q8WVT3 735 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 TFAP2BQ92481 460 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 RAB7BQ96AH8 199 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 PTERQ96BW5 349 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 VCPIP1Q96JH7 1222 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 RIPOR3Q96MK2 946 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 ANKRD27Q96NW4 1050 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 TIMP4Q99727 224 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 PIP5K1AQ99755 562 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 LRFN3Q9BTN0 628 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 NUP85Q9BW27 656 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 YIPF3Q9GZM5 350 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 C6orf62Q9GZU0 229 aaPredicted RBP5.15□□□□□ -1.59
VPS35-205ENST00000563984 ATP13A3Q9H7F0 1226 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 MVB12BQ9H7P6 319 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 COPS7BQ9H9Q2 264 aaPredicted RBP5.15□□□□□ -1.59
VPS35-205ENST00000563984 SLC38A10Q9HBR0 1119 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 NMRK2Q9NPI5 230 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 LZTFL1Q9NQ48 299 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 PFDN4Q9NQP4 134 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 ST6GALNAC1Q9NSC7 600 aaPredicted RBP5.15□□□□□ -1.59
VPS35-205ENST00000563984 KLC4Q9NSK0 619 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 STK32BQ9NY57 414 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 STX18Q9P2W9 335 aaKnown RBP5.15□□□□□ -1.59
VPS35-205ENST00000563984 CACNG4Q9UBN1 327 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 ATP6V1HQ9UI12 483 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 TNFSF13BQ9Y275 285 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 PCDHA1Q9Y5I3 950 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 ENTPD2Q9Y5L3 495 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 SNX9Q9Y5X1 595 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 NR2E3Q9Y5X4 410 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 RAD54BQ9Y620 910 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 RIMBP3CA6NJZ7 1639 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 RIMBP3BA6NNM3 1639 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 RIMBP3Q9UFD9 1639 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 NPATQ14207 1427 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 THOC2Q8NI27 1593 aaKnown RBP5.14□□□□□ -1.59
VPS35-205ENST00000563984 BAZ1AQ9NRL2 1556 aaPredicted RBP5.14□□□□□ -1.59
VPS35-205ENST00000563984 A0A087WV62 115 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP5.14□□□□□ -1.59
VPS35-205ENST00000563984 A0A0U1RQK1 487 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 LOC100506127A0A0U1RQW1 187 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 ZNF320A2RRD8 509 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 XKRY2A2RUG3 117 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 PI4KAP2A4QPH2 592 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 TISP43B9A030 160 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 B9A039 149 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 SLCO1B7G3V0H7 640 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 TRAPPC3O43617 180 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 ECE2O60344 883 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 CACNG3O60359 315 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 STX10O60499 249 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 GNA14O95837 355 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 PNPP00491 289 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 C1RP00736 705 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 ASS1P00966 412 aaKnown RBP5.14□□□□□ -1.59
VPS35-205ENST00000563984 IL6P05231 212 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 FGF4P08620 206 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 RPS17P08708 135 aaKnown RBP5.14□□□□□ -1.59
VPS35-205ENST00000563984 GSTT2P0CG29 244 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 GSTT2BP0CG30 244 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 TXNP10599 105 aaKnown RBP5.14□□□□□ -1.59
VPS35-205ENST00000563984 KRT3P12035 628 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 WT1P19544 449 aaPredicted RBP5.14□□□□□ -1.59
VPS35-205ENST00000563984 CHMP24386 653 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 RGS2P41220 211 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 GARSP41250 739 aaKnown RBP5.14□□□□□ -1.59
VPS35-205ENST00000563984 KRT6CP48668 564 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 TUBP50607 506 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 HNRNPMP52272 730 aaKnown RBP eCLIP5.14□□□□□ -1.596e-6■■■■□ 20.3
VPS35-205ENST00000563984 PRRX1P54821 245 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 SOX10P56693 466 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 PSMC5P62195 406 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 MRPS25P82663 173 aaKnown RBP5.14□□□□□ -1.59
VPS35-205ENST00000563984 CEBPZQ03701 1054 aaKnown RBP5.14□□□□□ -1.59
VPS35-205ENST00000563984 CDK18Q07002 472 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 ZNF177Q13360 481 aaPredicted RBP5.14□□□□□ -1.59
VPS35-205ENST00000563984 ADIPOQQ15848 244 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 TXNRD1Q16881 649 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 KCTD21Q4G0X4 260 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 SAPCD1Q5SSQ6 148 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 C6orf163Q5TEZ5 329 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 DAB2IPQ5VWQ8 1189 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 FAM160B1Q5W0V3 765 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 DCLRE1AQ6PJP8 1040 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 BLOC1S2Q6QNY1 142 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 CWC27Q6UX04 472 aaKnown RBP5.14□□□□□ -1.59
VPS35-205ENST00000563984 TRMT10CQ7L0Y3 403 aaKnown RBP5.14□□□□□ -1.59
VPS35-205ENST00000563984 TAF8Q7Z7C8 310 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 PEG10Q86TG7 708 aaKnown RBP5.14□□□□□ -1.59
VPS35-205ENST00000563984 FJX1Q86VR8 437 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 CAMK1DQ8IU85 385 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 CLVS1Q8IUQ0 354 aaPredicted RBP5.14□□□□□ -1.59
VPS35-205ENST00000563984 UNC5CLQ8IV45 518 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 MPP5Q8N3R9 675 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 LIX1Q8N485 282 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 DPP10Q8N608 796 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 OR2C3Q8N628 320 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 LINS1Q8NG48 757 aa5.14□□□□□ -1.59
VPS35-205ENST00000563984 OR9A1PQ8NGU1 263 aa5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms