RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 FRMD1Q8N878 549 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 OR4K2Q8NGD2 314 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 CEP76Q8TAP6 659 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 STAMBPL1Q96FJ0 436 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 SERAC1Q96JX3 654 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 ZSCAN5AQ9BUG6 496 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 KIFC1Q9BW19 673 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 ABCG8Q9H221 673 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 GDF3Q9NR23 364 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 NLE1Q9NVX2 485 aaPredicted RBP9.21□□□□□ -0.94
LDLR-210ENST00000559340 GGT7Q9UJ14 662 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 ZFR2Q9UPR6 939 aaKnown RBP9.21□□□□□ -0.94
LDLR-210ENST00000559340 PCDHGA5Q9Y5G8 931 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 SPO11Q9Y5K1 396 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 MAD1L1Q9Y6D9 718 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 SLC30A1Q9Y6M5 507 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 ZFHX2Q9C0A1 2572 aaPredicted RBP9.2□□□□□ -0.94
LDLR-210ENST00000559340 GLYATL1P3A0A0U1RQE8 302 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 A0A1B0GTW7 788 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 MROH6A6NGR9 719 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 A6NNZ2 444 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 C10orf142B7Z368 130 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 BHMG1C9JSJ3 638 aaPredicted RBP9.2□□□□□ -0.94
LDLR-210ENST00000559340 F8W8V4 182 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 BCAT2O15382 392 aaPredicted RBP9.2□□□□□ -0.94
LDLR-210ENST00000559340 LDB2O43679 373 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 USP1O94782 785 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 IGHV4-34P06331 123 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 HOXC4P09017 264 aaPredicted RBP9.2□□□□□ -0.94
LDLR-210ENST00000559340 GSTA2P09210 222 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 PGAM1P18669 254 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 ITGALP20701 1170 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 KELP23276 732 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 PSMA3P25788 255 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 HTR1BP28222 390 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 ETV3P41162 512 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 MAGEA3P43357 314 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 RABIFP47224 123 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 ZNF140P52738 457 aaPredicted RBP9.2□□□□□ -0.94
LDLR-210ENST00000559340 PPP2CBP62714 309 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 RACK1P63244 317 aaKnown RBP9.2□□□□□ -0.94
LDLR-210ENST00000559340 PPP2CAP67775 309 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 PDIA2Q13087 525 aaKnown RBP9.2□□□□□ -0.94
LDLR-210ENST00000559340 PTK2BQ14289 1009 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 SLMAPQ14BN4 828 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 DUOXA1Q1HG43 343 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 GPR33Q49SQ1 333 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 LYPLAL1Q5VWZ2 237 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 LAIR1Q6GTX8 287 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 RAET1GQ6H3X3 334 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 ESRP1Q6NXG1 681 aaKnown RBP9.2□□□□□ -0.94
LDLR-210ENST00000559340 ZNF534Q76KX8 674 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 IQCHQ86VS3 1027 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 SYT12Q8IV01 421 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 SLC41A1Q8IVJ1 513 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 PALM2Q8IXS6 379 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 TRAM1L1Q8N609 369 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 DEFB119Q8N690 84 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 MFSD2AQ8NA29 543 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 ZNF398Q8TD17 642 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 CALML6Q8TD86 181 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 PYROXD1Q8WU10 500 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 HEXDCQ8WVB3 486 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 KLK6Q92876 244 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 CENPTQ96BT3 561 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 ULK4Q96C45 1275 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 KLHDC7BQ96G42 594 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 CDKN2AIPNLQ96HQ2 116 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 SIGLEC10Q96LC7 697 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 FMO2Q99518 471 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 EBNA1BP2Q99848 306 aaKnown RBP9.2□□□□□ -0.94
LDLR-210ENST00000559340 SPATA16Q9BXB7 569 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 MIR1-1HGQ9H1L0 117 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 EPC1Q9H2F5 836 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 BPIFA1Q9NP55 256 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 AASDHPPTQ9NRN7 309 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 PHPT1Q9NRX4 125 aaPredicted RBP9.2□□□□□ -0.94
LDLR-210ENST00000559340 PIH1D1Q9NWS0 290 aaKnown RBP9.2□□□□□ -0.94
LDLR-210ENST00000559340 SYBUQ9NX95 663 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 GRHL1Q9NZI5 618 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 EIF2B4Q9UI10 523 aaKnown RBP9.2□□□□□ -0.94
LDLR-210ENST00000559340 GMEB2Q9UKD1 530 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 COQ6Q9Y2Z9 468 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 ARL5AQ9Y689 179 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 PLXNB3Q9ULL4 1909 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 WDFY4Q6ZS81 3184 aa9.2□□□□□ -0.94
LDLR-210ENST00000559340 ESYT3A0FGR9 886 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 E7ESA3 106 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 H7C0S8 307 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 CACNB4O00305 520 aaPredicted RBP9.19□□□□□ -0.94
LDLR-210ENST00000559340 AURKAO14965 403 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 AVILO75366 819 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 SPAG6O75602 509 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 BPIP17213 487 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 CD38P28907 300 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 ID4P47928 161 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 AFF3P51826 1226 aaKnown RBP9.19□□□□□ -0.94
LDLR-210ENST00000559340 THOP1P52888 689 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 C21orf59P57076 290 aa9.19□□□□□ -0.94
LDLR-210ENST00000559340 CACNG1Q06432 222 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms