RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 FASLGP48023 281 aa12.61□□□□□ -0.39
SHMT2-223ENST00000556689 CDC20Q12834 499 aa12.61□□□□□ -0.39
SHMT2-223ENST00000556689 LBRQ14739 615 aaKnown RBP12.61□□□□□ -0.39
SHMT2-223ENST00000556689 LACTB2Q53H82 288 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-223ENST00000556689 SNAP47Q5SQN1 464 aa12.61□□□□□ -0.39
SHMT2-223ENST00000556689 PPP1R15BQ5SWA1 713 aa12.61□□□□□ -0.39
SHMT2-223ENST00000556689 ERMARDQ5T6L9 678 aa12.61□□□□□ -0.39
SHMT2-223ENST00000556689 WDR74Q6RFH5 385 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-223ENST00000556689 CEACAM20Q6UY09 585 aa12.61□□□□□ -0.39
SHMT2-223ENST00000556689 ARHGAP36Q6ZRI8 547 aa12.61□□□□□ -0.39
SHMT2-223ENST00000556689 Q6ZVL8 140 aa12.61□□□□□ -0.39
SHMT2-223ENST00000556689 UNC5BQ8IZJ1 945 aa12.61□□□□□ -0.39
SHMT2-223ENST00000556689 LZTR1Q8N653 840 aa12.61□□□□□ -0.39
SHMT2-223ENST00000556689 SCARF2Q96GP6 870 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-223ENST00000556689 EIF3CQ99613 913 aaKnown RBP12.61□□□□□ -0.39
SHMT2-223ENST00000556689 CTRCQ99895 268 aa12.61□□□□□ -0.39
SHMT2-223ENST00000556689 TRIT1Q9H3H1 467 aaKnown RBP12.61□□□□□ -0.39
SHMT2-223ENST00000556689 LRRC4CQ9HCJ2 640 aa12.61□□□□□ -0.39
SHMT2-223ENST00000556689 FBXO8Q9NRD0 319 aa12.61□□□□□ -0.39
SHMT2-223ENST00000556689 PLAAQ9Y263 795 aa12.61□□□□□ -0.39
SHMT2-223ENST00000556689 PLEKHM1Q9Y4G2 1056 aa12.61□□□□□ -0.39
SHMT2-223ENST00000556689 ZFC3H1O60293 1989 aaKnown RBP12.6□□□□□ -0.39
SHMT2-223ENST00000556689 PRR19A6NJB7 356 aa12.6□□□□□ -0.39
SHMT2-223ENST00000556689 PSMD11O00231 422 aa12.6□□□□□ -0.39
SHMT2-223ENST00000556689 EPHB6O15197 1021 aa12.6□□□□□ -0.39
SHMT2-223ENST00000556689 SOCS5O75159 536 aa12.6□□□□□ -0.39
SHMT2-223ENST00000556689 CPP00450 1065 aa12.6□□□□□ -0.39
SHMT2-223ENST00000556689 TPM2P07951 284 aa12.6□□□□□ -0.39
SHMT2-223ENST00000556689 TCN2P20062 427 aa12.6□□□□□ -0.39
SHMT2-223ENST00000556689 OAS2P29728 719 aaKnown RBP12.6□□□□□ -0.39
SHMT2-223ENST00000556689 NOP2P46087 812 aaKnown RBP12.6□□□□□ -0.39
SHMT2-223ENST00000556689 OGDHQ02218 1023 aa12.6□□□□□ -0.39
SHMT2-223ENST00000556689 DPTQ07507 201 aa12.6□□□□□ -0.39
SHMT2-223ENST00000556689 SLC10A7Q0GE19 358 aa12.6□□□□□ -0.39
SHMT2-223ENST00000556689 KLRB1Q12918 225 aa12.6□□□□□ -0.39
SHMT2-223ENST00000556689 CA9Q16790 459 aa12.6□□□□□ -0.39
SHMT2-223ENST00000556689 TMCO4Q5TGY1 634 aa12.6□□□□□ -0.39
SHMT2-223ENST00000556689 DOK6Q6PKX4 331 aa12.6□□□□□ -0.39
SHMT2-223ENST00000556689 RFX8Q6ZV50 586 aa12.6□□□□□ -0.39
SHMT2-223ENST00000556689 TIPARPQ7Z3E1 657 aaKnown RBP12.6□□□□□ -0.39
SHMT2-223ENST00000556689 ARHGAP22Q7Z5H3 698 aa12.6□□□□□ -0.39
SHMT2-223ENST00000556689 NCSTNQ92542 709 aa12.6□□□□□ -0.39
SHMT2-223ENST00000556689 SCRN2Q96FV2 425 aa12.6□□□□□ -0.39
SHMT2-223ENST00000556689 ZNF599Q96NL3 588 aa12.6□□□□□ -0.39
SHMT2-223ENST00000556689 OR2M4Q96R27 311 aa12.6□□□□□ -0.39
SHMT2-223ENST00000556689 AGPAT1Q99943 283 aa12.6□□□□□ -0.39
SHMT2-223ENST00000556689 NOD2Q9HC29 1040 aa12.6□□□□□ -0.39
SHMT2-223ENST00000556689 PCSK1NQ9UHG2 260 aa12.6□□□□□ -0.39
SHMT2-223ENST00000556689 TMEM98Q9Y2Y6 226 aa12.6□□□□□ -0.39
SHMT2-223ENST00000556689 ARHGEF17Q96PE2 2063 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-223ENST00000556689 BLACEA4D250 179 aa12.59□□□□□ -0.39
SHMT2-223ENST00000556689 STK17BO94768 372 aa12.59□□□□□ -0.39
SHMT2-223ENST00000556689 LHCGRP22888 699 aa12.59□□□□□ -0.39
SHMT2-223ENST00000556689 HSPA9P38646 679 aaKnown RBP12.59□□□□□ -0.39
SHMT2-223ENST00000556689 ZNF235Q14590 738 aa12.59□□□□□ -0.39
SHMT2-223ENST00000556689 NFKBIBQ15653 356 aa12.59□□□□□ -0.39
SHMT2-223ENST00000556689 CRTC2Q53ET0 693 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-223ENST00000556689 PYCR3Q53H96 274 aa12.59□□□□□ -0.39
SHMT2-223ENST00000556689 CT47A1Q5JQC4 288 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-223ENST00000556689 FKBP15Q5T1M5 1219 aa12.59□□□□□ -0.39
SHMT2-223ENST00000556689 ACAD10Q6JQN1 1059 aa12.59□□□□□ -0.39
SHMT2-223ENST00000556689 C16orf46Q6P387 395 aa12.59□□□□□ -0.39
SHMT2-223ENST00000556689 ADAMTSL4Q6UY14 1074 aa12.59□□□□□ -0.39
SHMT2-223ENST00000556689 TECPR1Q7Z6L1 1165 aa12.59□□□□□ -0.39
SHMT2-223ENST00000556689 ATCAYQ86WG3 371 aa12.59□□□□□ -0.39
SHMT2-223ENST00000556689 ZNF761Q86XN6 746 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-223ENST00000556689 MCOLN2Q8IZK6 566 aa12.59□□□□□ -0.39
SHMT2-223ENST00000556689 SFRP1Q8N474 314 aa12.59□□□□□ -0.39
SHMT2-223ENST00000556689 NPWQ8N729 165 aa12.59□□□□□ -0.39
SHMT2-223ENST00000556689 TEX19Q8NA77 164 aa12.59□□□□□ -0.39
SHMT2-223ENST00000556689 SLC37A2Q8TED4 501 aa12.59□□□□□ -0.39
SHMT2-223ENST00000556689 STARD8Q92502 1023 aa12.59□□□□□ -0.39
SHMT2-223ENST00000556689 MIB2Q96AX9 1013 aa12.59□□□□□ -0.39
SHMT2-223ENST00000556689 NUDCD1Q96RS6 583 aa12.59□□□□□ -0.39
SHMT2-223ENST00000556689 KCTD15Q96SI1 283 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-223ENST00000556689 ANP32EQ9BTT0 268 aa12.59□□□□□ -0.39
SHMT2-223ENST00000556689 TMEM184BQ9Y519 407 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-223ENST00000556689 KCTD3Q9Y597 815 aa12.59□□□□□ -0.39
SHMT2-223ENST00000556689 PCDHB3Q9Y5E6 796 aa12.59□□□□□ -0.39
SHMT2-223ENST00000556689 ANKRD36A6QL64 1941 aa12.58□□□□□ -0.39
SHMT2-223ENST00000556689 NPIPB15A6NHN6 443 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-223ENST00000556689 POLR1CO15160 346 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-223ENST00000556689 MTSS1O43312 755 aa12.58□□□□□ -0.4
SHMT2-223ENST00000556689 MAP3K6O95382 1288 aa12.58□□□□□ -0.4
SHMT2-223ENST00000556689 PSMA2P25787 234 aa12.58□□□□□ -0.4
SHMT2-223ENST00000556689 CD97P48960 835 aa12.58□□□□□ -0.4
SHMT2-223ENST00000556689 HCAR3P49019 387 aa12.58□□□□□ -0.4
SHMT2-223ENST00000556689 ZNF135P52742 658 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-223ENST00000556689 COPB1P53618 953 aaKnown RBP12.58□□□□□ -0.4
SHMT2-223ENST00000556689 HHEXQ03014 270 aa12.58□□□□□ -0.4
SHMT2-223ENST00000556689 LRP8Q14114 963 aa12.58□□□□□ -0.4
SHMT2-223ENST00000556689 PTPRRQ15256 657 aa12.58□□□□□ -0.4
SHMT2-223ENST00000556689 PPP6R3Q5H9R7 873 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-223ENST00000556689 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-223ENST00000556689 ARMC12Q5T9G4 340 aa12.58□□□□□ -0.4
SHMT2-223ENST00000556689 USP45Q70EL2 814 aa12.58□□□□□ -0.4
SHMT2-223ENST00000556689 MARK2Q7KZI7 788 aaKnown RBP12.58□□□□□ -0.4
SHMT2-223ENST00000556689 TSPAN33Q86UF1 283 aa12.58□□□□□ -0.4
SHMT2-223ENST00000556689 NLRP8Q86W28 1048 aa12.58□□□□□ -0.4
SHMT2-223ENST00000556689 GALNT13Q8IUC8 556 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms