RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 ZNHIT2Q9UHR6 403 aa10.71□□□□□ -0.7
ACTN1-216ENST00000556083 TRAF6Q9Y4K3 522 aa10.71□□□□□ -0.7
ACTN1-216ENST00000556083 A0A087X0B3 334 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 PGRMC2O15173 223 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 LCA5LO95447 670 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 AP2A1O95782 977 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 SERPINA1P01009 418 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 HLA-DQA2P01906 255 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 ZCCHC18P0CG32 403 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 PTPN2P17706 415 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 ITGB5P18084 799 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 PTGER3P43115 390 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 SSR2P43308 183 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 KIR3DL1P43629 444 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 LDLRAP1Q5SW96 308 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 CCDC36Q8IYA8 594 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 ADAM32Q8TC27 787 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 RFKQ969G6 155 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 DGCR14Q96DF8 476 aaKnown RBP10.7□□□□□ -0.7
ACTN1-216ENST00000556083 P2RY11Q96G91 374 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 GBA3Q9H227 469 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 SLC28A3Q9HAS3 691 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 MRPL39Q9NYK5 338 aaKnown RBP10.7□□□□□ -0.7
ACTN1-216ENST00000556083 PTGFRNQ9P2B2 879 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 CNTNAP1P78357 1384 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 GLTPD2A6NH11 291 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 ADAMDEC1O15204 470 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 PAGE1O75459 146 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 SNAPC5O75971 98 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 BPGMP07738 259 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 SPATA31C1P0DKV0 1188 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 NR4A1P22736 598 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 GABRR2P28476 465 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 NDUFV1P49821 464 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 SOX10P56693 466 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 BEX3Q00994 111 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 ZNF33AQ06730 810 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 C15orf59Q2T9L4 293 aaPredicted RBP10.7□□□□□ -0.7
ACTN1-216ENST00000556083 ZNF697Q5TEC3 545 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 UBE2R2Q712K3 238 aaPredicted RBP10.7□□□□□ -0.7
ACTN1-216ENST00000556083 LINC00471Q8N535 108 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 TRPV3Q8NET8 790 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 LNX1Q8TBB1 728 aaPredicted RBP10.7□□□□□ -0.7
ACTN1-216ENST00000556083 UPF1Q92900 1129 aaKnown RBP eCLIP10.7□□□□□ -0.76e-12■■□□□ 13.4
ACTN1-216ENST00000556083 LINGO1Q96FE5 620 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 KIFC1Q9BW19 673 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 POLMQ9NP87 494 aaPredicted RBP10.7□□□□□ -0.7
ACTN1-216ENST00000556083 SPATA2Q9UM82 520 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 SMIM28A0A1B0GU29 152 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 GABRDO14764 452 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 SEPT4O43236 478 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 EPORP19235 508 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 ATP5A1P25705 553 aaKnown RBP10.7□□□□□ -0.7
ACTN1-216ENST00000556083 CD52P31358 61 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 ARL2P36404 184 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 RPL38P63173 70 aaKnown RBP10.7□□□□□ -0.7
ACTN1-216ENST00000556083 ZNF846Q147U1 533 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 LCN1P1Q5VSP4 162 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 KCNK18Q7Z418 384 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 IRF2BP2Q7Z5L9 587 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 AHI1Q8N157 1196 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 C15orf40Q8WUR7 153 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 ACOT12Q8WYK0 555 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 NTAN1Q96AB6 310 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 CAMK1GQ96NX5 476 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 OR52E6Q96RD3 313 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 ING3Q9NXR8 418 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 XPR1Q9UBH6 696 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.7□□□□□ -0.7
ACTN1-216ENST00000556083 MAFBQ9Y5Q3 323 aaPredicted RBP10.7□□□□□ -0.7
ACTN1-216ENST00000556083 NFAT5O94916 1531 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 SAGE2PA6NJ88 616 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 MATN3O15232 486 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 PI15O43692 258 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 NRP2O60462 931 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 EDF1O60869 148 aaKnown RBP10.7□□□□□ -0.7
ACTN1-216ENST00000556083 VIPP01282 170 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 ABL2P42684 1182 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 AP3S2P59780 193 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 IFI35P80217 286 aaPredicted RBP10.7□□□□□ -0.7
ACTN1-216ENST00000556083 PRR5P85299 388 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 SRSF11Q05519 484 aaKnown RBP10.7□□□□□ -0.7
ACTN1-216ENST00000556083 ITGB3BPQ13352 177 aaPredicted RBP10.7□□□□□ -0.7
ACTN1-216ENST00000556083 XKR4Q5GH76 650 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 SMIM5Q71RC9 77 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 SLC41A1Q8IVJ1 513 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 FUKQ8N0W3 1084 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 TSPAN14Q8NG11 270 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 SPOCK2Q92563 424 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 THRSPQ92748 146 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 RAD51AP1Q96B01 352 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 FERD3LQ96RJ6 166 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 C11orf84Q9BUA3 381 aaPredicted RBP10.7□□□□□ -0.7
ACTN1-216ENST00000556083 TLE6Q9H808 572 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 PLGRKTQ9HBL7 147 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 FBXO6Q9NRD1 293 aaPredicted RBP10.7□□□□□ -0.7
ACTN1-216ENST00000556083 CDC14AQ9UNH5 594 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 TFR2Q9UP52 801 aa10.7□□□□□ -0.7
ACTN1-216ENST00000556083 SAMHD1Q9Y3Z3 626 aaKnown RBP10.7□□□□□ -0.7
ACTN1-216ENST00000556083 PCDHGA11Q9Y5H2 935 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms